RNA id: TU100779


Basic Information

Item Value
RNA id TU100779
length 2062
lncRNA type sense_over
GC content 0.33
exon number 1
gene id LOC103034453
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18992668 ~ 19008366 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaactgCAAATTTCATTATGTTACAagcatttattcacatttttgttgatttttagtttactacataatttgaacacacaaattgaccaatagaacatttttcaaaaatgacctaaaattaactctttttacactgaattccattgaaagttaagtaGGTATTATCTCTCCTCTCTAAAGTTGCTTtctggagatacatgttttacacaaaatGCAGATTCAAATACCTTTCTTAGTGTTTAAGCTTCATAACCAGCAGAGCCATCCAGGCAGTTGGTACATTTTGGTACAGTTGCTGAATTCGTTTACCTTCTGGACCTGAATTAAGCCCCTCTAGAGCCTTGTTTGCACAATGTACAATTTAACCCTACACTATGTAAGCTATGTCAGTACTGTTTAGCTGAGGTCAGTCTTTTCAAGCTCATCACTTCTGTTATAAAGtctaaaatttatattttttttcagcagctgCTGAatggaaactcttgctcttctgcATCTTTTACAAAGGCACTGATAAAATCCAGTGAACTGAAGGTTGCGTTCCCTGTAGACACTGCATTTGATTTCAGGGAAGTAGGGAGAACGGGGCAGAAACTGATGCAGAGTGAAAACAGAGGCTTTTAATGTTATGACACAAAGCAGAACACGTTGTTCATTGTCTTCTTGTATTCCCAGAGCAGCGTGATCTCTACATTTTCACAGCAGTTGGGCAGAATATTGCTCAAGATTCCCCCTAAAGGCAGTGTATCGTGTTAGTTGTAAGGTTTGCATTTACTCAACTTTTAGATGAATTATTAATAAGCACTAgattcagaaaataaaagctttatttttattcacagcAGATATTTGCAGGTTGCTGGTGTAAAATTGTTTCATTCTGTATACCAACACACAAAGTGATCGATCCAGCAGACTTGAGAATACAAATATCATTGATATTTTGGGGCATTTTTTTCacagtatattgtttttttcactCATGCAAGAACAACCtgtaatttttacagtttttaaggTAGTGAAGTTAATTAGTAAATTGTTAATCAAGCTGACTGGTGTTTGCTAATGTGATGTGGAGAAACTATACCACCAAAAATGTAATCTGCCAACTCACTAATCACTCTGTTCTGAGAGTAATGAATATACCacttaattacaaatttaaaaaaatatttatgtaaaagCCATATATCACATATTTAGCCTAATTGTATCCCTTTGATGAACGCTGATCATCTAAAAATTACTGTCATCTCAAGAAAAGTCTCAGTCAACAGTCCTAATTCTGAACATTACTCTAAATACAGATTCATGAACAATACAAGAAAAACAGTACCTTACTACCTTACTAGTAAGCCAGTAACATACCTAACTTTAGTTAATATGCTAATTTATTTCCAGGACTTTAGGCACAGAACAACCCACGTGAACACTTGAAAAGAATCAGGACATTTAGACTGTAttctattttatcatttacagcagaaaaagtacaaaaaataaaaaaacgaataaaatattcagttttGTGAATTGATTCTTTTTAACTTTATCCCTGTAGGGATTTTACTTTTCAATGAATTTCCAAAGATGTACAGACATAAACTGAACACATATAGAAGCAGATATTTTCAAACTTTAATTGCTTTCATTGTTCGTCTTTTCTACACATATGTGCATGAGTGatatttcaaaataagagtttagagtgcagttttttttgtgtaaaatgctgACTGAAACTGACAAGATAAAGGGTTTCTTTGTGAGCCAGTGATGCAGAAAATAAAGGATTATACCTCAATATTTTAGTAGCTTTTCTACATTAGaggtacttttttaaaatttgccAAAGTTTTCTACTCTGCTATGCAACACAGTTTAAACAAATGCTGAAGGTTTCCTAGACATCTTACTTATATCCAAGTTGCTGaacaattaaatgaattaataagtgAACAAACTGACAAAAAGATTGTGATTCttcatttttgttacatttgcaCATTGTTTCTGTTACCCTGTAACCATTTTAACCTGTACCTCATCTCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100767 lncRNA downstream 6630 18984195 ~ 18986193 (-) True G74804
TU100756 lncRNA downstream 24913 18960804 ~ 18967910 (-) True G74796
TU100748 lncRNA downstream 42707 18948629 ~ 18950116 (-) True G74792
TU100688 lncRNA downstream 343052 18649439 ~ 18649771 (-) True G74740
TU100683 lncRNA downstream 352638 18637263 ~ 18640185 (-) True G74735
TU100915 lncRNA upstream 284768 19279652 ~ 19341936 (-) True G74910
TU100920 lncRNA upstream 292456 19287340 ~ 19290287 (-) True G74915
TU100940 lncRNA upstream 330508 19325392 ~ 19418804 (-) True G74928
TU100913 lncRNA upstream 350061 19344945 ~ 19350011 (-) True G74909
TU100916 lncRNA upstream 359209 19354093 ~ 19355051 (-) True G74911
XM_022672242.1 mRNA downstream 5765 18978848 ~ 18987058 (-) False LOC103028224
XM_022672244.1 mRNA downstream 6178 18978848 ~ 18986645 (-) True LOC103028224
XM_007246627.2 mRNA downstream 15658 18975308 ~ 18977165 (-) True LOC103027908
XM_022671893.1 mRNA downstream 19510 18970412 ~ 18973313 (-) False LOC103034129
XM_007246550.2 mRNA downstream 19679 18970412 ~ 18973144 (-) True LOC103034129
XM_022672245.1 mRNA upstream 28806 19023690 ~ 19046218 (-) True LOC103035727
XM_007246555.3 mRNA upstream 28806 19023690 ~ 19042135 (-) False LOC103035727
XM_007246556.3 mRNA upstream 86264 19081148 ~ 19086198 (-) True LOC103036047
XM_022672248.1 mRNA upstream 92009 19086893 ~ 19095789 (-) False asb15
XM_022672247.1 mRNA upstream 92009 19086893 ~ 19095789 (-) False asb15
TU100745 other downstream 52359 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 963076 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1109037 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3214400 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 4447385 14542209 ~ 14545438 (-) False LOC103025073
TU100809 other upstream 76054 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 864810 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 1032278 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 1092534 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1901219 20896103 ~ 20896176 (-) True trnat-agu_2

Expression Profile