RNA id: TU100846


Basic Information

Item Value
RNA id TU100846
length 1255
lncRNA type sense_over
GC content 0.35
exon number 2
gene id cadps2
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19140149 ~ 19322775 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCAGATGATCCAAGGTGCAAAACAGCAGCCAATCATAATAATCCTCTAAGAGACAGAGGCGGAGCCTGTTGGTTAGTGGACGTCAATCCCTGGCTGTTTTAACCCAGAAAGTTCTGCGGGAGAAGAGAGATAGGTCATGTAAGAAGTTCTCAGctcaaagtattaaaaaaatactataaattgCTAGAATTCAGTGCTGTAGATAGTGAGTAAATCAGTACCAAGCTGACCGCTGTTAGATTTGAGGCTGCAGAATGGAGGAAGGGAGAGAGGCTCACTTATTCTGCCTCGTGAAACTTTGCCAGTTACACGCTCCGGTAATCTCCAGGTGGAGGTAGAACCTGGTGTCCATGTGCCCCTGGGGTGGTGTGTGAAAACCCTGGATAGGATTCGgccagttttttttgttgggtgGAATGGATTGGATGATCTTCCCGAACACTCCTCGTGTCGTTCAGCTGCACATGGCCGGTGCAGTGCGCGGTGCTAGGATGGCGAGCCAAGCCCGAGGACCCAAGTGacttcattacacttcattCACATTTTCAAACACTTGATAGTGAACATTAAAGAAATTTGTGGACTTtgaaattatttgagtaaaaaaggacacttttaatttttgtttatttttttgaaagaaAAGGGACACTTCTATTTCAATACAAAGACACTAAAAGGGTTAAACTTTTAATTGGTTTGATTACTGTTATTTAATTTTGATAATTTCTAAGTGGTTTTGATATTCATtcattattgtttttgctacagagaattgttattttttatttttggttgttTGTTAAAGGGTGAACTATTGGTGTAAAATAACCTAGAGGTTTAATTGGATAACACTAATTATAACAATACTTGCCTTAAATTAATAATCCGTCAGACCTAGAAGgaagaaataattaattagttataaaatacctataaatagattaaaataataCTTACCTTAAACTGCATAAATACCTCTAAAATAAAGAACACCGGTGATTAGagaaataatagtaattaatataatattaaatatacaatactGAAATACAAAGGGGAAACTTAGCATTTTCATTGTTGACCAAGGTTATTGAAGGTTGAATTTCTTTTGGAAAACGAGTAACTgtgaattgtttatttatttatttacagaatttgtttatttttgttacagtattttatttaactattgCAATTGATTTTGACATTATAATACACTTTATTGTTGCACAAATTCTGGTCTCATTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100802 lncRNA upstream 108142 19085803 ~ 19086231 (+) True G74833
TU100800 lncRNA upstream 111852 19082312 ~ 19082521 (+) True G74831
TU100774 lncRNA upstream 199510 18992678 ~ 18994863 (+) True G74810
TU100776 lncRNA upstream 199510 18992788 ~ 18994863 (+) False G74810
TU100720 lncRNA upstream 223507 18957638 ~ 18970866 (+) True G74770
TU100875 lncRNA downstream 263825 19459973 ~ 19462085 (+) False tmem17
TU100986 lncRNA downstream 281850 19477998 ~ 19481088 (+) True G74951
TU100987 lncRNA downstream 284203 19480351 ~ 19481987 (+) False G74951
TU100995 lncRNA downstream 310970 19507118 ~ 19510980 (+) True G74958
TU100996 lncRNA downstream 310970 19507118 ~ 19507522 (+) False G74958
XM_007246558.3 mRNA upstream 60493 19119547 ~ 19133880 (+) True slc13a1
XM_007246559.3 mRNA upstream 60494 19119547 ~ 19133879 (+) False slc13a1
XM_022672249.1 mRNA upstream 79424 19098516 ~ 19114949 (+) True iqub
XM_007246552.3 mRNA upstream 112974 19056787 ~ 19081399 (+) True LOC103034777
XM_007246553.3 mRNA upstream 112974 19056789 ~ 19081399 (+) False LOC103034777
XM_022672254.1 mRNA downstream 134103 19330251 ~ 19334337 (+) False fezf1
XM_022672253.1 mRNA downstream 134107 19330255 ~ 19334337 (+) True fezf1
XM_007246574.3 mRNA downstream 145132 19341280 ~ 19362921 (+) True aass
XM_007246575.3 mRNA downstream 145132 19341280 ~ 19362921 (+) False aass
XM_015605117.2 mRNA downstream 257905 19454053 ~ 19459308 (+) True slc15a5
TU100801 other upstream 108817 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 739176 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 2906044 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4273370 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 4544822 14648829 ~ 14649551 (+) True G73533
TU101007 other downstream 331843 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 1007471 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1827108 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1892474 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 2054319 21250467 ~ 21264776 (+) True mov10l1

Expression Profile