RNA id: TU100913


Basic Information

Item Value
RNA id TU100913
length 1672
lncRNA type inter_gene
GC content 0.43
exon number 9
gene id G74909
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19344945 ~ 19350011 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATTATCAGCAAGTACATTTTCACTGCAGCTCTGCATCAAGACTAAGGAAACAAAAATGAACAGTCgcaataaaactgtatttaaccCTGCTATGGTTAAACCTTTGTGAATATTTCACAGATCACATGTCTTCTGAATGGATTATGGATTATCTGTCATCCTTTACACTcataaatgtaatgtatgttCAAAGAGAAATAAGCATGTCCAAAACGTGGGTCTATGCATTCTTACTTATCTACTTatgcatttctttctttatatttgaaattagtttttattcCTCAATTCTGCGATTTCATATGTATAATCAACATTAGGCAAATCATAGGTACTACAATTGTATGGAAAAGCATATGATAAGCATAAAATCTTCACATTATGtggaaattatatattttataagatCAGAGTTATATACACACTGATGTCTCTCGCATAGcagcataaaaaacaacaacagcctGTGCCTTACCTGTCGTGATCGATGTGCTTTTTGGGATCATACATACAGAAGGGCTTCTCAATAGTGGTGCACTCAGTCATGAACTCTATGGAGCCTCCTGTGTCTGCAGAAATGTCACAAATAGCCAAGAACTTGTGTGGCAGCTCTGGACAGCCTTCTATTGAATAGGATGAAAGCTTTGAAGGTTTCATGAGCTTCTGTGCATCCAGTCGTCGTAGCAGCCTTGGAGTGTGAGGGTCCCAGTAGATACCGTTAATCAGGCATGTTGTGTAAGGTGCTATGGTGGATCTGAAGTGTGAGGTGTAGCGTTCAGGATGATGCTCATACTCAAAAGGGTCATACAGGCCATCACTCTTTCGAATGAGATGGTGACGTCTGCTGATGACCGTGCCATACACTTTAGTTCGGTCTCCTGATTCGCAGACGTCTTTCAGTTCATGTGGCTCCACAAACTCACATGGAAGTTCATTAAAAATCTCTTGTGCACCCTTAGATACGTTGCCAGTGCCAGTGAACACAAACGTGAGGGGACCAATAGACTTGGGCATCAATCCCAGAGATATCTCATATCCACAGTCCCTCACTGCTTGAACGGACTGACTGACGTTTCTGTAGTTGTGTGCCATTCCAATATGCATAAAGGGAGTGTGATGTCCAAGGGCAAGAAAACGCAGACCCAGGCCatgtaaaatattaatcatTCCTGCAACACCAGCCCACTTTCCAAAGGCTACGATTCTGAAACCATTCTCGTCCACCATTTTCTCATAATCAATGAGTCGCACATCTTTTTAAGGATATCATCTAAAAGCCCCATGTTGGGCTCCTGAGCTTTGATGGTGTGAGAAAAGAAAGCGTAAGTTTTATGTGGAATAACTTTTTCTTCTGGAGGCCTCTTCACACCTACAATGAGAGAAGCCTCCGAGATGTCCTCCTGTAAGATGGCTCCTGCTTTCTCATAGtaTCTGTCGTGGATTGCTCTCCTGTTGGAGGGCTGCACCAGGACTTTATAGCCCTCAGCAGTGATTTCCTTTACATGGCGAGGAGCAAGGGGTGCACGCCTCTCCCATACGTTGACGTCCTCACGACGGATGCCCATCACACCCTTGTAGTGGTTTGACCTCCGCTGGCTGCACATGCAGCCCCTCACCCTTCTGCCCTGGTTCCTGGCAAGTCTCAGCATGGTTTACCCAGGCTTCAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100915 lncRNA downstream 3009 19279652 ~ 19341936 (-) True G74910
TU100920 lncRNA downstream 54658 19287340 ~ 19290287 (-) True G74915
TU100779 lncRNA downstream 350061 18992823 ~ 18994884 (-) False LOC103034453
TU100767 lncRNA downstream 358752 18984195 ~ 18986193 (-) True G74804
TU100756 lncRNA downstream 377035 18960804 ~ 18967910 (-) True G74796
TU100916 lncRNA upstream 4082 19354093 ~ 19355051 (-) True G74911
TU101154 lncRNA upstream 290810 19640821 ~ 19688118 (-) True G75069
TU101183 lncRNA upstream 395553 19745564 ~ 19746445 (-) True G75081
TU101206 lncRNA upstream 449374 19799385 ~ 19799625 (-) True G75092
TU101207 lncRNA upstream 454755 19804766 ~ 19804970 (-) True G75093
XM_022672248.1 mRNA downstream 249156 19086893 ~ 19095789 (-) False asb15
XM_022672247.1 mRNA downstream 249156 19086893 ~ 19095789 (-) False asb15
XM_015605110.2 mRNA downstream 249156 19086895 ~ 19095789 (-) True asb15
XM_007246556.3 mRNA downstream 258747 19081148 ~ 19086198 (-) True LOC103036047
XM_007246555.3 mRNA downstream 302810 19023690 ~ 19042135 (-) False LOC103035727
XM_022672256.1 mRNA upstream 14587 19364598 ~ 19437614 (-) False ptprz1
XM_022672255.1 mRNA upstream 14587 19364598 ~ 19437614 (-) True ptprz1
XM_022672257.1 mRNA upstream 14587 19364598 ~ 19437613 (-) False ptprz1
XM_022672261.1 mRNA upstream 14587 19364598 ~ 19437612 (-) False ptprz1
XM_022672259.1 mRNA upstream 14587 19364598 ~ 19437612 (-) False ptprz1
TU100809 other downstream 272057 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 404481 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 1315198 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1461159 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3566522 15761764 ~ 15778423 (-) False LOC103046265
TU101215 other upstream 509683 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 677151 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 737407 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1546092 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 1920118 21270129 ~ 21273017 (-) True LOC111193105

Expression Profile