RNA id: TU100915


Basic Information

Item Value
RNA id TU100915
length 534
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G74910
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19279652 ~ 19341936 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggcTACTGGgcaagaggcatgtgctagtcttcaccctcctggtgttggggcattactagtgatgggtttggtaattggccatgtaaattgggggtgaaaatgggaaaacaatttgaagaagaaaaaaacaaatgaagcaGAATGCAGGTTAGCTTGATGGTTATAAGGTTAGCGTTAACCCTTTACCACAGCGCTCGCGGACAGGCAACAAGTGCTTCACAGGGTCTGTAAGAGGTGAGAAAACAGAATATAACAGGGCAGGTTAGCGGCGTTTACATACCTTTCAGCGTTAAAAGCGTGGCGAGTGGACTGTAGCGCGGCCTCGACCCCCGGTAATCTCATTAACAGCCGGGTGGACTGACAGACAGCCGGGCAGAGCCGCAGGTAacgagacacacagacagaccgACAGGCAGACAGACCGCAGCGGGCTGGAGGAGGAAAAGGAGGCTCTGAACCCCCGAAGGACAGACTCTTCTCAGGACGGAGGCGGCCTCCACTCGTCGTACGTGCAGCAGCAGAATGTGTGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100779 lncRNA downstream 284768 18992823 ~ 18994884 (-) False LOC103034453
TU100767 lncRNA downstream 293459 18984195 ~ 18986193 (-) True G74804
TU100756 lncRNA downstream 311742 18960804 ~ 18967910 (-) True G74796
TU100748 lncRNA downstream 329536 18948629 ~ 18950116 (-) True G74792
TU100688 lncRNA downstream 629881 18649439 ~ 18649771 (-) True G74740
TU100913 lncRNA upstream 3009 19344945 ~ 19350011 (-) True G74909
TU100916 lncRNA upstream 12157 19354093 ~ 19355051 (-) True G74911
TU101154 lncRNA upstream 298885 19640821 ~ 19688118 (-) True G75069
TU101183 lncRNA upstream 403628 19745564 ~ 19746445 (-) True G75081
TU101206 lncRNA upstream 457449 19799385 ~ 19799625 (-) True G75092
XM_022672248.1 mRNA downstream 183863 19086893 ~ 19095789 (-) False asb15
XM_022672247.1 mRNA downstream 183863 19086893 ~ 19095789 (-) False asb15
XM_015605110.2 mRNA downstream 183863 19086895 ~ 19095789 (-) True asb15
XM_007246556.3 mRNA downstream 193454 19081148 ~ 19086198 (-) True LOC103036047
XM_022672245.1 mRNA downstream 233434 19023690 ~ 19046218 (-) True LOC103035727
XM_022672256.1 mRNA upstream 22662 19364598 ~ 19437614 (-) False ptprz1
XM_022672255.1 mRNA upstream 22662 19364598 ~ 19437614 (-) True ptprz1
XM_022672257.1 mRNA upstream 22662 19364598 ~ 19437613 (-) False ptprz1
XM_022672261.1 mRNA upstream 22662 19364598 ~ 19437612 (-) False ptprz1
XM_022672259.1 mRNA upstream 22662 19364598 ~ 19437612 (-) False ptprz1
TU100809 other downstream 206764 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 339188 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 1249905 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1395866 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3501229 15761764 ~ 15778423 (-) False LOC103046265
TU101215 other upstream 517758 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 685226 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 745482 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1554167 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 1928193 21270129 ~ 21273017 (-) True LOC111193105

Expression Profile