RNA id: TU100987


Basic Information

Item Value
RNA id TU100987
length 968
lncRNA type inter_gene
GC content 0.51
exon number 5
gene id G74951
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19477998 ~ 19481987 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccGATATCTACATTATCTGGTGTGTCCCATCCTGCCTTGTCAGAGCCTCTGCTGTTCGAGTCAGGACTCTGAGCACGAAGAAAAGCAGTTTTCCACTTCGTCTTCTTCAAAAGGCCACTACGGGAGCCCTCCTGACTGGCCTCAGAACAGGGGCTGGAACCACCAGCACTAACATCACCTTCCTCTAGGGCGCGAAGTTCAGCCttttctctctaatgCAAGTTCCAGTTCCATGGTATCCTCCTCTGGCTCGTCTTCGCCTTCAGAGTTCTCAACTGAGTGGTTTCTGCTTTGCTGGTTAGCATTAGAAGGGCTTTCTGCATCACAAACAGCAGGAGAGCCTGAAGGCTGAGCATCTTCCCCTTCATTCTCCTGACCACTGTCAGTTTTCTCCTCTATAGCCAGAATCTTCTTCCTCCATTGCTCCTCCGCCTCCTTCACCTCAGGTGGTATGAGGGGTGCAAGGAGAGAGGCAGCCACCCCTTTTCGCTCTTCCTCATCACTGGTTAAAGCCACCACACTCTCTATTACTTCCTCTTTTTTGTTTCCCTTTTAGGTACAGCAGCAGACACTGCAGGAGTCTGTTCAGGATATCCCTCTGCATGGTGGGACATGCCGCTGCCATTGATTGATGAGGTTTCTGTGTACTGCTGCTGAAGACTCTGCATCTGATCTGCCAGATAGTGGGGAAGCTCCCAGGCAACTTCATTAGTCTGGGTGTTCCAATAGTAGTAGCAGCCCGTGTTCTCATCCCACACCTCCTGCCAATCTCCCATCTCAAGACCAGCTTAATTAGAAACAActCCTGCCAAGGAATACTGTGTATTATACTGAAATTCTTGTGCAGATCCATTCTGAACATGAGCTTGTTGCTCCGTTTTGGGTTCAGGGCGTGGAGGGGTAGGTGCAGGAGCACTGGGCACAGAATCTTCTGCCTGGGCTGGCTGAGTGGTGATTGCATCAATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100875 lncRNA upstream 18266 19459973 ~ 19462085 (+) False tmem17
TU100845 lncRNA upstream 283936 19194542 ~ 19196415 (+) False cadps2
TU100846 lncRNA upstream 284203 19194373 ~ 19196148 (+) False cadps2
TU100802 lncRNA upstream 394120 19085803 ~ 19086231 (+) True G74833
TU100800 lncRNA upstream 397830 19082312 ~ 19082521 (+) True G74831
TU100995 lncRNA downstream 25131 19507118 ~ 19510980 (+) True G74958
TU100996 lncRNA downstream 25131 19507118 ~ 19507522 (+) False G74958
TU101010 lncRNA downstream 45673 19527660 ~ 19527911 (+) True G74970
TU101032 lncRNA downstream 58933 19540920 ~ 19542987 (+) True G74982
TU101038 lncRNA downstream 58933 19540920 ~ 19543821 (+) False G74982
XM_022672263.1 mRNA upstream 18164 19459958 ~ 19462187 (+) True tmem17
XM_015605117.2 mRNA upstream 21043 19454053 ~ 19459308 (+) True slc15a5
XM_007246574.3 mRNA upstream 117430 19341280 ~ 19362921 (+) True aass
XM_007246575.3 mRNA upstream 117430 19341280 ~ 19362921 (+) False aass
XM_022672253.1 mRNA upstream 146014 19330255 ~ 19334337 (+) True fezf1
XM_007246588.3 mRNA downstream 11935 19493922 ~ 19503421 (+) True cnot2
XM_007246589.3 mRNA downstream 12080 19494067 ~ 19503421 (+) False cnot2
XM_007246587.3 mRNA downstream 12157 19494144 ~ 19503421 (+) False cnot2
XM_022672268.1 mRNA downstream 45225 19527212 ~ 19537617 (+) False LOC103044129
XM_022672266.1 mRNA downstream 46636 19528623 ~ 19537617 (+) False LOC103044129
TU100801 other upstream 394795 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 1025154 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 3192022 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4559348 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 4830800 14648829 ~ 14649551 (+) True G73533
TU101007 other downstream 46004 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 721632 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1541269 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1606635 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 1768480 21250467 ~ 21264776 (+) True mov10l1

Expression Profile