RNA id: XM_022672266.1


Basic Information

Item Value
RNA id XM_022672266.1
length 2470
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC103044129
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19527212 ~ 19537617 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCAGGCTGGTGGAGTAGCATGAGGAAAGGAAGGAGTTATCTTTTTATTCTTGTCTCGTTTTGCTGGTCTTTTTTCTTTAGGATGGATGCTGTTCATTACAAAAACTATTatgaagagttttaatcaaacAGTTCATCATTCATTACTGATCCTCATATTAAAACTTTGATACAAAGattttaaaactataataactaatttttactcagataaaatatttttcattgtaTCTCAAAATGTTTCACTGAAACCCCATTTGGTTTTGAGTATTTAACAAGGTTTTATATAGACCATGGATTCATGTAGTGACCCCGAGCAGCAGAACGGAAACTTGGAATTAACTGAGTTAGAGGCCAGTAATGTTGAGTGTGAGATTATGCCTTCTCTGTGTGATGGAAGACCTGATGGATCCAAAGGGTTCACCCCGAGCATCAATGGCCACGTGTCCAAGGAGCTGACTGAATCAGATCCCTTGCTTTCTAATGGCCGTCTATGGACATCAAATGTCTCCGGCCCTGTTCCACAGCAGTGTGAGGAACAGCGGCCAGTCTGTGTTCAGTCAAAGCCAAATGAATCAGTGTGTGTCATGGTACTCCAGATACTGGTTCCATTCCTCCTGGCAGGTTTAGGGACTGTGATGGCTGGCATGCTGCTTGATGTAGTGCAGCATTGGAGTGTGTTTCAGAAAATAACAGAGATTTTCATCCTGGTGCCAGCTTTACTTGGCCTAAAAGGGAACCTGGAGATGACACTGGCATCCAGACTGTCTACAGCGGTGAATATTGGCAAAATGAACTCATCTAAAGAGAAGTGGAACTTGATCATTGGAAATCTTGCTCTCAAGCAGGTTCAGGCCACAGGCCTGGGTTTCCTTGCTGCACTGGCAGCCTCAGCGCTGGGATGGGTTCTGGACAAGAAACTTGTCATCAATTATGCAGCACTGTTATGTTGCAGTAGTGTGGTGACAGCCTTCACAGCATCATTATTGCAAGGTATCATTATGGTGGGAGTAATTATTGGCTCAAAGAGAGCAGGCATCAACCCAgataacatagcaacaccaaTTGCAGCCAGTTTTGGTGACCTCATCACTCTAGGACTGCTTGCTGTTATAAGTCAAGGGTTCTTCAACTGTATGgAACGCTGCCCCTATGTTGCCTATGTGGTGTGTGCTTTCTTTCTATGCCTGACGCCAGTCTGGGTTATAATGTCATTTCGTCACACAGAGAGCCGCAAGCTGCTGTATTGTGGTTGGGAGCCCATAATTACAGCCATGGTTATCAGCAGCCTGGGTGGACTCATTTTGGACAGAGCCATGACTGATCCAAATCTAATGGGACTCGTGGTTTACACACCTGTTATTAATGGTGTTGGTGGTAACTTGGTGGCCATTCAGTCAAGTCGTATAGCGACATACCTTCACTCTACGTGTTCCTTGGGGAAGTTGCCTGAGGACACCAAAAGCTGTTACTGTCCGTTCCGCACCTTTTATGgcaaagGTCCAAACAGCAGGACATCTCAGGTGCTGCTTCTCTTGGCTATCCCAGGtcatgttctctttctctacatCATTAACCTCATGCAAGGTGGTCACACAATCCCAACACCAGTCTTCACTGCTCTTTACTTAGCAGCAGCTTTTACACAGgtGTTTCTCCTGCTGTGCATTGCCGATTGGATGGTACACTGCTTGTGGAGATATGGTCGTGACCCAGACAGCTTTTCTATTCCATATCTGACAGCTTTGGGAGATTTGCTGGGCACTGGTCTTTTGGCTTTGTGTTTTCGTCTGCTCCAGGTCATCAGTGATGTGGACGATCATTTGGGTGACTAGAAGATGCCACATTActtgtgaaaaaagtgattCTGACTCTGTGAAGAGTTACCAACCACTGTTTTTAAGACGTCTGTCTTACTTTGGACAactattaaataatgtaataaataattaaacaaaaatgataaatactttttttatttgctcgCTTGAAGGGAGAAGTTTTAATCTTTAAACATACATTAGATTATCTAGCATTTCTAAGTTTGAGTGGATGGCGGTGGAGCCTAAATCTGAAACTGTTCGCAAtgcttgtttttaaatatagaaaCTTATGTAAATATTCTTCCTTttgttaaaatgttgaaaatgtctGACACTGAAATTTGTGGTGAGGATGGAAATGGAAATATTCTCCTGATCATTCATTACTCTATAAAGATCATATCTATGCAGGTGTTGCTGCACAATAGAACAGTGCACCATTAttgcaaagtgtgttaaatcCTTCATAAGATGTTTGATTTGTCTGTCTAGCAGTGCTACAAGCAAGTCTTTCTGAAAATTTACTTGGCCTTCCAGACCTCAACCTGACCTTCACCATTCCAGATAACAGTTGTTGTAGATAGGGGTATATTGTATCTGAACTGTTTGATTCtattattgtataataaaaatatttatttgtataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101010 lncRNA upstream 712 19527660 ~ 19527911 (+) True G74970
TU100995 lncRNA upstream 17643 19507118 ~ 19510980 (+) True G74958
TU100996 lncRNA upstream 21101 19507118 ~ 19507522 (+) False G74958
TU100987 lncRNA upstream 46636 19480351 ~ 19481987 (+) False G74951
TU100986 lncRNA upstream 47535 19477998 ~ 19481088 (+) True G74951
TU101032 lncRNA downstream 3303 19540920 ~ 19542987 (+) True G74982
TU101038 lncRNA downstream 3303 19540920 ~ 19543821 (+) False G74982
TU101054 lncRNA downstream 55948 19593565 ~ 19595241 (+) True G74992
TU101064 lncRNA downstream 62170 19599787 ~ 19620245 (+) True G74996
TU101058 lncRNA downstream 87042 19624659 ~ 19649384 (+) True G74995
XM_007246588.3 mRNA upstream 25202 19493922 ~ 19503421 (+) True cnot2
XM_007246589.3 mRNA upstream 25202 19494067 ~ 19503421 (+) False cnot2
XM_007246587.3 mRNA upstream 25202 19494144 ~ 19503421 (+) False cnot2
XM_022672263.1 mRNA upstream 66436 19459958 ~ 19462187 (+) True tmem17
XM_015605117.2 mRNA upstream 69315 19454053 ~ 19459308 (+) True slc15a5
XM_007246591.3 mRNA downstream 2844 19540461 ~ 19560568 (+) True LOC103044412
XM_022672269.1 mRNA downstream 25437 19563054 ~ 19569137 (+) True amn1
XM_007246592.2 mRNA downstream 25437 19563054 ~ 19569137 (+) False amn1
XM_022672273.1 mRNA downstream 36697 19574314 ~ 19590443 (+) False LOC103045341
XM_022672271.1 mRNA downstream 36698 19574315 ~ 19590443 (+) True LOC103045341
TU100801 other upstream 443067 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 1073426 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 3240294 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4607620 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 4879072 14648829 ~ 14649551 (+) True G73533
TU101298 other downstream 666002 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1485639 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1551005 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 1712850 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 3217535 22755152 ~ 22772561 (+) False LOC103028957

Expression Profile