RNA id: TU101010


Basic Information

Item Value
RNA id TU101010
length 252
lncRNA type intronic
GC content 0.56
exon number 1
gene id G74970
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19527660 ~ 19527911 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcctatcccagcaggcatcgggcggaaggcaggatacaccctggacaggccgccaatccatcgcagggcagacagacagagacagacacacagacacattcactcacacactcacacctaaggggcaatttcaatcaagttccaattagcctgaacgtgccgtctttggactgtgggaggaaaccggagaacccggaggaaacccacgcagacacggggagaacgtgcaaactccacacagaaagaccagGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100995 lncRNA upstream 16680 19507118 ~ 19510980 (+) True G74958
TU100996 lncRNA upstream 20138 19507118 ~ 19507522 (+) False G74958
TU100987 lncRNA upstream 45673 19480351 ~ 19481987 (+) False G74951
TU100986 lncRNA upstream 46572 19477998 ~ 19481088 (+) True G74951
TU100875 lncRNA upstream 65575 19459973 ~ 19462085 (+) False tmem17
TU101032 lncRNA downstream 13009 19540920 ~ 19542987 (+) True G74982
TU101038 lncRNA downstream 13009 19540920 ~ 19543821 (+) False G74982
TU101054 lncRNA downstream 65654 19593565 ~ 19595241 (+) True G74992
TU101064 lncRNA downstream 71876 19599787 ~ 19620245 (+) True G74996
TU101058 lncRNA downstream 96748 19624659 ~ 19649384 (+) True G74995
XM_007246588.3 mRNA upstream 24239 19493922 ~ 19503421 (+) True cnot2
XM_007246589.3 mRNA upstream 24239 19494067 ~ 19503421 (+) False cnot2
XM_007246587.3 mRNA upstream 24239 19494144 ~ 19503421 (+) False cnot2
XM_022672263.1 mRNA upstream 65473 19459958 ~ 19462187 (+) True tmem17
XM_015605117.2 mRNA upstream 68352 19454053 ~ 19459308 (+) True slc15a5
XM_022672266.1 mRNA downstream 712 19528623 ~ 19537617 (+) False LOC103044129
XM_022672267.1 mRNA downstream 1837 19529748 ~ 19537617 (+) True LOC103044129
XM_007246591.3 mRNA downstream 12550 19540461 ~ 19560568 (+) True LOC103044412
XM_022672269.1 mRNA downstream 35143 19563054 ~ 19569137 (+) True amn1
XM_007246592.2 mRNA downstream 35143 19563054 ~ 19569137 (+) False amn1
TU100801 other upstream 442104 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 1072463 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 3239331 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4606657 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 4878109 14648829 ~ 14649551 (+) True G73533
TU101007 other downstream 80 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 675708 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1495345 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1560711 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 1722556 21250467 ~ 21264776 (+) True mov10l1

Expression Profile