RNA id: TU101058


Basic Information

Item Value
RNA id TU101058
length 1560
lncRNA type inter_gene
GC content 0.44
exon number 8
gene id G74995
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19624659 ~ 19649384 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAATAAAGAAATAACCTAGAAATGAACTTCTGGGTGACCAAAaacaaactgattcagtaaaTATATCTCCCTTTATTAAGTCCATCAATATTTTACAAGCAAAAGAACATAATAAAGGCCAATTAAATATAACACAAACATCATGACACGAGGCAAAGACTTCAAGTAACAGTTGAAGTCTATGCTTTGTCAATGCCAAGTTCTTCAGGTGTTGAAATGCCTAGCTCATCGAGCGTGGGCCGGAGCTCTTGGATAACATAGGGGTAGATCTCTTTGTGGGGCCCAGATTTGTCCTGACTGCCTCAAGAATACGGATGGCACTGGCTAAGTCATTTAACCTCCGACAGGCCCTCAAAGCTGCATCCAGGATCTTGGGCTCAGGTACGAGGTCATATCCAATCAGAGTGTTCATACCTCAGCTCCCAGGCGTCGATATCTGGCTTGTTGAAGTAGGTGACCCAGCGAGCATCAAACTCTTCATCTGTCTCCTGTTTGCCATGAGAGTAGCAGCGAGCAGCTGCAGGAGGTATACTGCGGTCGTGACCGCGCTAAACTCCGAGCCCCGGAGACGGAAAGGCGGACGGCGGCTCTGAACATGATGTCGGTCGGGACACCGGCTGACTGCGGACCGGACTCTGAACGGTATCAAGTACCGCAAGAATGGAGGAGGAGGCCGCGGCCCTGAGAGCTGAAACCAGCAGCGCTGCTTCTTTCTCCGCCCGTATTCAGACAGATCCCGCCCCCTGCGCTACTACTGCACCAAGAGGCTGTGTATGTTCGAGGAGCTTCACATTCAGCTGGCCTGCATCCCAATCACACGCAAAATCTCCCTCTGAATATGGGGCTCCTGTGTGTTGATGTTTGCATCTCCCACCTGACCATCCTCATACCTGTGTAACACAGCAAGGGAGCCAGCTTGAATCAAGCTTCTCAAGACCGAGTGCAACACAGTTTAGATTCCGACTCTGAAGAAACCTTGACTGTACTGGACGACTCTGTAAAAAAGTGAAGACACATTTATGTTCTTCTGTATGATAGTAATAATCTTAATAACTACAAGATCCAAGACGTGACAAAAGAGTGAACTTTTTCCCACCATTTTCATAAGCTCATAAGTATTTGtatatataagtaaaaataagGATTATTTATAACAGTTGGGTGTAAACCCCTTGCAGCCACTGACTGCCAGATATCTTAAAGCCATGGACAACCCCAAATGCTTAGTTCCCTGAGATGAGATGTTTTGACGGACCTTCACTCCAGTCACCTTCAGTTTTTCTGTCAGTAAATGAAAAGTATTCTAAATTGGGGTCTAAACTGCCCAACTCTAATCATTTTCCAAATATGTGACATGGTGTGTAATCTATGTGGcagtgtgaacagcaaaaacacaccaaatttgacattttaaatACGATTTGGGCTACTTTTATATGTGTTattgaaaacaataaatatttgttACACAGCAACTTGACTCACACACTTCACATTAAGCATTACTCTTTTACACATGTTCACACATGTCAGTTAAGGAGCGTGAACTATAACAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101064 lncRNA upstream 4414 19599787 ~ 19620245 (+) True G74996
TU101054 lncRNA upstream 29418 19593565 ~ 19595241 (+) True G74992
TU101038 lncRNA upstream 80838 19540920 ~ 19543821 (+) False G74982
TU101032 lncRNA upstream 81672 19540920 ~ 19542987 (+) True G74982
TU101010 lncRNA upstream 96748 19527660 ~ 19527911 (+) True G74970
TU101087 lncRNA downstream 82632 19732016 ~ 19733038 (+) True G75017
TU101106 lncRNA downstream 112390 19761774 ~ 19765765 (+) True G75026
TU101113 lncRNA downstream 150001 19799385 ~ 19799649 (+) True G75033
TU101114 lncRNA downstream 155382 19804766 ~ 19804976 (+) True G75034
TU101257 lncRNA downstream 410986 20060370 ~ 20122740 (+) True G75131
XM_022672273.1 mRNA upstream 34216 19574314 ~ 19590443 (+) False LOC103045341
XM_007246603.3 mRNA downstream 10889 19660273 ~ 19688110 (+) True LOC103047790
XM_007246635.2 mRNA downstream 123103 19772487 ~ 19786105 (+) True LOC103030754
XM_022671921.1 mRNA downstream 193918 19843302 ~ 19844222 (+) True LOC111193059
XM_007246615.3 mRNA downstream 205214 19854598 ~ 19858835 (+) True LOC103024220
XM_007246614.3 mRNA downstream 210049 19859433 ~ 19872712 (+) True LOC103023471
TU101007 other upstream 91586 19527991 ~ 19533073 (+) False LOC103044129
TU100801 other upstream 539103 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 1169462 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 3336330 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4703656 14891534 ~ 14921003 (+) False rpgrip1l
TU101298 other downstream 554235 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1373872 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1439238 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 1601083 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 3105768 22755152 ~ 22772561 (+) False LOC103028957

Expression Profile