RNA id: TU101215


Basic Information

Item Value
RNA id TU101215
length 3068
RNA type TUCP
GC content 0.47
exon number 2
gene id G75100
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19859694 ~ 19865982 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGCACAGACACAGCTGGAACCACTGGAACTGGCTCTGCctctacttttttatttttctttttctggcaTCCCTTCACCCTTGCCCTTCCACCTTTTGGTTTGCCTTTTTGACCATTTTGACCACAAATACCATTTTTAGGCTGTGCCTCTTCATAGATGGGAATGGGCCTCCTGACACAACCGTTGGGTGTATGCGAACAACAATAGGCTGTCTTTTTCACTGTAAATGTTGTGGATCCTGTATCAGTTACCTCTTTGATAGGCTCCATCTTCATGTACAGACCCGCTTTCTGAGCACAGCTTACATGAAAGGCAGTgtaacaattggccttgctgcACTGAATGCAGGCACCAACTCCTCTCTCTTTACAAAGGTAGCAGGTCAATTTCCAACGTGCTGGCGGAATGTTAGCAACACCATCAATGGGCTCAATAAAGAGTGTATTAGTAAAGCCAACCTCAGGGACCCATATGGCACAGACTACATGGCCCCAACGATCGTCATCTGTCCTCTTAAGAGCGCCACCTTTATTAGGGCAAAAAATACACTCGGCCGGCTGGGAAGGAGACTGTAAACAATGACGACACAACCACTGGCCCTCTGGAATGTGAGGGACCCCATAACACTCCTGATGCACAGCTAAGTTGCACATGTCGCAAAAAAGAATAGCGTTACTGTTCTGACACTCGCCATCCATGCAGATGCAGCACACAGCATCCTCATCAATGAGGGACTGCGGATCTACCTGACCCTGGCTTTCAAAAAAGGACTCTTTCTCAAAGCGGTCCATGAGAAACTCAAAAACATTCTGGGACACCTGGCTGTAaccctcactcttcctcttctcATTGATCAGCTCCAGCCATGCATAATCTTCCTCGTCCATATCATACTCCACCTCCTCATCAAGCTCCTCCGACGTCTTCTCCACATATTTGAAATAAGCAGAGGGTCTCCGTGGCACAGCTGGAAGATTATACTCAACCGTTTTGATTTTTGGCTCTGGTAACCTGCCCTGAGCTGGAGAACTCTGTCCTGCAGTTGGAGCTGCACCCTTCTTCTGCTGATAGTTTTTGAGCCGTACAGAGCGCACCAAAGCCTGCTGAGGTTTCTCAGTGTTCTCCTTGTTGCTGTCGCATTCACTGATCTCCTGAGCTAAGGGATCATCACTGTCGATGACATCGAGCTTGTCAAAAATACTGAGTCTGTGAACTTGACCATCGATCTCCAACTCAACCATGCGCTGGGCCTCGGCATAGGTGAGGGTCTCGCGGTTTCGTGAGGGTTTGATGGGTGATGGAGGCCTTGGTGTGGTGGGTGGACGATTAGTCCGactttttttcctcattttaacACCTGAAAGAAACTAACAGAGAAACCTTCATGTATAAACTAAGCAAGACATGACTTTGGTGACCAGAACATTTCTTTCAACATTTCAATCAGCATTCAAAACACCTAGTCAAACTTCtagataaaaatgtaaagtgtaaaactggCAGTTAGTCTAGTCACTCCCTGACAGAAAATCATCTCAGATATAAAAACAAGGGCTGTAACAGATACTTGGCTATAACAGCCTCAAGCCAAGACAGAAACTATCAACTAGCTTCAAAGTTTGTCAACAAATGCCCCTCTTAACAGTTTAAACCGAATCATGTGTCCTGTTACACCTTTACGAGTACAGCACCTCTGGATTAGccaacctagctagctaaactacCTGAGCAGAATAAAACCACGTGGACATTATGCCGTTATAATTTGCATGGTACTGTTTGGGTGCTAAGGAGACAAACAGTCTAGCTAACTGAAAGCGCGGCTTCAGCGTTGCCACGGTCGAGCAGTGTTTTAGCAAACTAGCcaggATAGTTACGCTAGCTAACTGCCATGCTAAGGCGCTAGCCAGCTAAGCTTACATTACAAATATGATAATAAACTAACCTAGTTAACTCACGAGACCACAGTCCCTGCCCTGACCTGCAAGAATACAATAATTTCCCGCCCCAAACACCTAAAAAGAAGCTTTTAAAAGAGGTTAAtcattagctaagctagctagtttatGAAGTGTCCGGGGTTAAACTCTGCAGGGCAGTGGGGTCTCCAGGACTGCTGGTTTGAGAACGCCTGAATGAAACCAGCTTAGCTTGCaagctaactagcttgctaaAACAGGGCCACACTGACTGACCGGCCGAGCGGGAGCTTTAACACAACCTGAGAGAaacttttaacagttttatGCACATTTTGAACTGCATGCAATTGAAGAACACCAGTATATAAACGTACTAGAACcgtagttagcttgttagctagctaacatcacaCAGGCGAAGTAGTTTAACGCTAGCTAGGTTAGTGTGTTATCTGGCTAGCTGTACCACAACACAAACTGGCCAAGGGCGAGCACAAAATCGGCGCTTCGCTTCTCGCTAGCGTTAGCTGGCTAATCCGTGCTACTGGAACTCGAAATTAGGCAAAGATGGCGTCAGACAAAACAAACAAGGTCTAAACGGGAACATTAGCGAGGAGTAACACTCTCACTTCCACAGGCAGCGCGCTCTCAGCTGAGTGTCGAAGTATAACAAGATATTTTCTCACTTAAAGGAATGAAACAAGACCAGACTTTCTTACCTTCTGTTTCGAAGTATCGTAAAACAAGCCAACGAGCCCTCACAGCGGCACCAGGGCACGCTAGCTAAACTACGCTAGCTAATAGCTAAAAGCAGCAGCGGTGTGTATAGGCAGGGCCTGAGGAGCAGCGAGGGTTAGCGTTAGCGTTATAAcgttaacacacacatacacactctgctACAGCAGCGCGCTAGCTAGCATCCAACGGATTCCGCCCGAGCTTTTAACCGATTTTTCAGAAGAATACAGTCCAGTATCCTCAACAACAGTCCTGATTCAGATAGGACCCCTCTAAACCGCGTTAAAATAACCATTCGCCCGTTTCTACGGCCCGTAGGTTTGCGGTTTAAAGCGCGGTATGTGGGTGCTAGCAAGCAGGCTAGTTCGCCGTTCCTGCCCCCAACAACAATGCGGCTGTACGGATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101207 lncRNA downstream 54724 19804766 ~ 19804970 (-) True G75093
TU101206 lncRNA downstream 60069 19799385 ~ 19799625 (-) True G75092
TU101183 lncRNA downstream 113249 19745564 ~ 19746445 (-) True G75081
TU101154 lncRNA downstream 171576 19640821 ~ 19688118 (-) True G75069
TU100940 lncRNA downstream 440890 19325392 ~ 19418804 (-) True G74928
TU101227 lncRNA upstream 5160 19871142 ~ 19872681 (-) True G75106
TU101228 lncRNA upstream 5160 19871142 ~ 19872681 (-) False G75106
TU101362 lncRNA upstream 166628 20032610 ~ 20034759 (-) True G75208
TU101365 lncRNA upstream 218447 20084429 ~ 20086739 (-) False hsd17b12
TU101368 lncRNA upstream 235730 20101712 ~ 20124437 (-) True LOC107197502
XM_022672288.1 mRNA downstream 87369 19762795 ~ 19772325 (-) False LOC103030439
XM_022672286.1 mRNA downstream 87369 19762795 ~ 19772325 (-) False LOC103030439
XM_022672287.1 mRNA downstream 87369 19762795 ~ 19772325 (-) False LOC103030439
XM_022672285.1 mRNA downstream 87369 19762795 ~ 19772325 (-) True LOC103030439
XM_022672283.1 mRNA downstream 110193 19730163 ~ 19749501 (-) False LOC103021510
XM_007246616.3 mRNA upstream 73653 19939635 ~ 19972658 (-) True LOC103024527
XM_022672292.1 mRNA upstream 171473 20037455 ~ 20051285 (-) False ticrr
XM_007244246.3 mRNA upstream 171473 20037455 ~ 20049272 (-) True ticrr
XM_007244247.3 mRNA upstream 194404 20060386 ~ 20062075 (-) True c8h11orf96
XM_022672294.1 mRNA upstream 207524 20073506 ~ 20081333 (-) False alkbh3
TU100809 other downstream 786806 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 919230 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 1829947 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1975908 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 4081271 15761764 ~ 15778423 (-) False LOC103046265
TU101358 other upstream 161180 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 221436 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1030121 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 1404147 21270129 ~ 21273017 (-) True LOC111193105
XR_002650263.1 other upstream 2590349 22456331 ~ 22513724 (-) False LOC103024007

Expression Profile