RNA id: TU101358


Basic Information

Item Value
RNA id TU101358
length 1447
RNA type TUCP
GC content 0.50
exon number 10
gene id G75207
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20027162 ~ 20032027 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTATTAAGGATTAGGACACTTGCCTGATCTTGAAATCTTTTAACTTCTCTGCATCAACCTTGTCAATAAGGAAGTCTGGTAACTTTTTGCCGAGTTGGTGGAAGCTGAAGAGCAGACACTCCACATAGCTGAACTGAAGCTTGGGTTCTTCACTCGTAGCGTTTTCCCCGTTCTCTTCCTCGGGTGGCAGAGGCATGAACTCCAGCAGCTTTTCAAAAAGCATGGTAAGGTTTGCCTCCAGCTTGTCCATGTCACCACAGAATGGGCTCATCTCAGCCAACAGCTTTAGGACTTCAAGCTGAATGTCCAATTCTGCCACAGGACTGGTAAGCATGCTGAGGTTGGGCAGAACGTGTTCACAGAAGTAGGTAACAAATCGAGTGGAATGGACATTTTTGAAAAGAGTGGCAGAGCTTGACGTGTGCACTGCAAGAGACGATCCACACTGTCAGTGTCAGCAGGGTTAAGGGCTTGCTCCAAGAAGGCCTGTTCCACCACGAGCTCAACAAGCTGTTGCCTCCCACTAACTGTCTGCAGGTACTTCAGACCAGACAGGACCCGCATGAGCAGCACAAACTCCTCACCCGTTACATCTTCCAGTACCTTTTTCGTCTCAGTGAAGATGTAGTCCTCAACCTCCTTGGTCATGATGTCCTCTGGCATTGTCTTCAGCTTGGAGGAGAGGAATTTTATTGCCCTTTCTCGCACAACATCCTCCCCTTGCAGAATCTGACTAAACAGgcctccaagtgtccCTTTGGCATCAATTTTGAATATGGAGATTAACGCAGTGTTTACTTGGTTGAATTCTGCTGAATCGTCTGTTTGCAGTAGCTGTGTGAGTATATCTGCTACTCTGGGTAAATTTTCTCCAGAAGCAAAACGTGGTAGTTCTTTAATGGCCTGCCTGCGAATCGATACATCTTCATCTTCACATAAATCCAACTGTGCATTAATTGCTGCATCTGCAAGCTCTGGAAAACTGCTGAAGAATTTTGGAATAAACTGGGCTGCCAATCGCTTCTCCTTTGGGCCTCCTTTTACACCATCCAGAATAACCTGGTAGGCCTCTTTATGCTTGCTCAAATCTTCTTTAGCGTCTGCGAGGATCCCATAGTTACGGTACAGCTCCTCCACGGTGGCCGCCATCTGCGCGAGTCGGAGCGCACGGAAAGTCAGATAAACACGAGCTACGGAAGCCTCCTCCACGGTGGCCGCCATCTGCGCGAGTCGGAGCGCACGGAAAGTCAGATAAACACGAGCTACGGAAGCCTCCCCCTCAGCGCGATACCAACCCAGTACTGTCTAAAACTCCCCCCGCATCAGAATCGACACCACACCGCGAGCACAACACCGCAGAGTCCGCCGTGTCCCCGTCAGTAACACCGCGCAGCCCGCCTCCGCCGCTCTCACACACGGAGATACAAGTGAAGCGGTTCCGCCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101227 lncRNA downstream 154481 19871142 ~ 19872681 (-) True G75106
TU101228 lncRNA downstream 154481 19871142 ~ 19872681 (-) False G75106
TU101207 lncRNA downstream 222192 19804766 ~ 19804970 (-) True G75093
TU101206 lncRNA downstream 227537 19799385 ~ 19799625 (-) True G75092
TU101183 lncRNA downstream 280717 19745564 ~ 19746445 (-) True G75081
TU101362 lncRNA upstream 583 20032610 ~ 20034759 (-) True G75208
TU101365 lncRNA upstream 52402 20084429 ~ 20086739 (-) False hsd17b12
TU101368 lncRNA upstream 69685 20101712 ~ 20124437 (-) True LOC107197502
XR_001518595.2 lncRNA upstream 69854 20101881 ~ 20129570 (-) False LOC107197502
XR_001518596.2 lncRNA upstream 69854 20101881 ~ 20126506 (-) False LOC107197502
XM_007246616.3 mRNA downstream 54504 19939635 ~ 19972658 (-) True LOC103024527
XM_022672288.1 mRNA downstream 254837 19762795 ~ 19772325 (-) False LOC103030439
XM_022672286.1 mRNA downstream 254837 19762795 ~ 19772325 (-) False LOC103030439
XM_022672287.1 mRNA downstream 254837 19762795 ~ 19772325 (-) False LOC103030439
XM_022672285.1 mRNA downstream 254837 19762795 ~ 19772325 (-) True LOC103030439
XM_022672292.1 mRNA upstream 5428 20037455 ~ 20051285 (-) False ticrr
XM_007244246.3 mRNA upstream 5428 20037455 ~ 20049272 (-) True ticrr
XM_007244247.3 mRNA upstream 28359 20060386 ~ 20062075 (-) True c8h11orf96
XM_022672294.1 mRNA upstream 41479 20073506 ~ 20081333 (-) False alkbh3
XM_007244248.3 mRNA upstream 41479 20073506 ~ 20081331 (-) True alkbh3
TU101215 other downstream 161180 19859694 ~ 19865982 (-) True G75100
TU100809 other downstream 954274 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 1086698 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 1997415 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 2143376 17877026 ~ 17883786 (-) False nrg4
TU101364 other upstream 55391 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 864076 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 1238102 21270129 ~ 21273017 (-) True LOC111193105
XR_002650263.1 other upstream 2424304 22456331 ~ 22513724 (-) False LOC103024007
XR_002650267.1 other upstream 4152542 24184569 ~ 24188202 (-) True LOC111193112

Expression Profile