RNA id: TU101390


Basic Information

Item Value
RNA id TU101390
length 1112
lncRNA type inter_gene
GC content 0.48
exon number 5
gene id G75224
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20153547 ~ 20158204 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAACTATGAACTAAGCTATGCAAAAGGGGAACTGGGTAATCATGAAATACATGGATTTGTTGGTTGACAAAATAAGCAGGATAGTTTAGATGAAATGAATACCGAATAGCCAAATCCTGCACAACCCAACGTCTCTTACTTTGATATTTAAAGAGCCCTACACTCCCTCATAACAGAGGTTCTTCAAATAAAATCATTACCAGGTCTGTAGGTGACAAGACAGTGTCTGCTCTCCGGTTCCacctgtatatctgtgcagccCCCAGACTCTAAAGGCAGAACATGAGGTCTGTAGGTAGTGCCATCGACATGCTCCCAGAAGCAGGCTCCCTCAAGAGAGCCAGCAATGATGCCGCCACAGGGAAAGAGACTGGAAGCAGCACGGGGAAGGTAGGACAGAGACACAACTGGACAATTGGAGCGTACTGGGGCAAGCTCCTGCACATGAGTGCTGGTGTCCCGGGTGTCGTACACCAGCACAGAGCCATTGCTTAGGCCAGCATATATGTAATTGTTGTTGTCATggcaccagcagcagctccagacaGGTTTACCAGTGTTATAGGCCTGAACCACAGTGTTTGTCCATAAGCTGGTGAGTTTGACAGTGTTATCGAGAGCAGCTGAGAGCAACAGGCTATCCTGTTGCCTGTTAAAAGAAAGGCCTCTGATCTGTTTAGCGTGGATAGGGACATAATGACTGGCTTTCAGATTCACAGCACTAATCTTCTTCACCCCATACCCAGGTACTAGAGTAGAGTGAGGGGAGGGTTGAGAGGCCAAGAGGCAGCTAAGGGGCTCACAGTAAGACAACACACGACAGCCTCCAGCCTGAGACACGAGAACAGCTTTGGAGAAGGCATAGTGTCCTCCGCTAGAGGACTCCTGTCTCTGAGACAGTGACAAAGTGGACGCCTGGGACTGAGAGGAGCTAGAGGCAGTCTGTCCCATCAACATCCGTAACTCCTGCACAAGAAAGAATGTAAAAGCAGGTTTATTGGACGTAGAAACATAGTCTAACACTATTACAGTTGACCCCAATGTATTTacagGGTATTTTTTTTGACACACTGGACAAAACTCCAGCTAGCATTTGCCCAGCACTGACTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101382 lncRNA downstream 2111 20148689 ~ 20151436 (-) True G75223
XR_001518595.2 lncRNA downstream 23977 20101881 ~ 20129570 (-) False LOC107197502
XR_001518596.2 lncRNA downstream 27041 20101881 ~ 20126506 (-) False LOC107197502
TU101368 lncRNA downstream 29110 20101712 ~ 20124437 (-) True LOC107197502
XR_002650257.1 lncRNA downstream 30805 20101881 ~ 20122742 (-) False LOC107197502
TU101400 lncRNA upstream 22946 20181150 ~ 20186487 (-) True G75232
TU101437 lncRNA upstream 114571 20272775 ~ 20276444 (-) True G75265
TU101415 lncRNA upstream 120272 20278476 ~ 20284642 (-) True G75243
TU101445 lncRNA upstream 143681 20301885 ~ 20302545 (-) True G75270
TU101473 lncRNA upstream 410643 20568847 ~ 20569357 (-) True G75286
XM_007244252.3 mRNA downstream 53298 20084428 ~ 20100249 (-) True hsd17b12
XM_022672295.1 mRNA downstream 72212 20074123 ~ 20081335 (-) False alkbh3
XM_022672294.1 mRNA downstream 72214 20073506 ~ 20081333 (-) False alkbh3
XM_022672304.1 mRNA upstream 34321 20192525 ~ 20206698 (-) False LOC103045029
XM_015604527.2 mRNA upstream 34321 20192525 ~ 20200987 (-) False LOC103045029
XM_015604526.2 mRNA upstream 34321 20192525 ~ 20200984 (-) True LOC103045029
XM_022672308.1 mRNA upstream 85162 20243366 ~ 20253823 (-) False LOC103029688
XM_022672307.1 mRNA upstream 85162 20243366 ~ 20253823 (-) True LOC103029688
TU101364 other downstream 53297 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 121520 20027162 ~ 20032027 (-) True G75207
TU101215 other downstream 287565 19859694 ~ 19865982 (-) True G75100
TU100809 other downstream 1080659 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 1213083 18939174 ~ 18940464 (-) True G74791
trnat-agu_2 other upstream 737899 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 1111925 21270129 ~ 21273017 (-) True LOC111193105
XR_002650263.1 other upstream 2298127 22456331 ~ 22513724 (-) False LOC103024007
XR_002650267.1 other upstream 4026365 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 4756094 24914298 ~ 24920365 (-) True G76377

Expression Profile