RNA id: TU101461


Basic Information

Item Value
RNA id TU101461
length 10149
lncRNA type sense_over
GC content 0.43
exon number 4
gene id LOC103032014
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20622641 ~ 20748208 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGACGAGCAGCTTGTGACCATGTCGGTGCGCGAGCTGAACCGGCAGCTGCGCGGCGTCAGCAAGGAGGAGGTGATCCGGCTGAAGCAGAAGCGCAGGACGCTGAAGAACCGCGGCTACGCGCAGTCGTGCCGCTTCAAGCGCGTGCAGCAGCGGCACGTGCTGGAGGGCGAGAAGACGCAGCTGCTGCAGCAGGTGGACCACCTCAAGCAGGAGATCTCCAGGCTGGTCCGGGAGAGGGACGCCTACAAGGAGAAGTACGAGAAGCTCGTCGGGAACGGCTTCCGAGAAAACGGCTCGAGCAGCGACAACAACCCTTCCTCTCCAGAGTTTTTCatGTCTTCAAGAAAATTTCTGCACCTGTGATATGACGTGTGCTCCTGCTCTCTACCCCTGCAGTCTGAGGTCCCGTTACACTGGAATGCTTATGGCTTAGATTGACCCATGGCACCAAGACTGCCACAAAGCACAACCTCTCCAAAGTCAAAGCCCTTAGGAAGAAACGAGAGAAAAGATGGAGAAGCGGAATCAAAcagagagaggggagaaagaaaaagatcaaTCCTGGTGCCATTCTTCAGTCTTCACCATCCTCTCTACTTCTGAACTACTCCAACAGCTCTACAGATAGTGCCCTCAGCGAATCAAAACCGACGAAGACCACCTTCTACAGGGGAAACctcacacaaacaacacactgaCGAAATGGacgatttaaaaaaacaaaaaaaactaaacaaaaacaaaaaaacagggagATCGAAGAGAAAATTCCACCTGAAATTTCTTAAAGACTTCTGCGagactctctttcttttttttccctcagccAGCACTGGCCCTCCTGTTCTCCTCAGAGATGCTGCTTCATtgtaattagcattagcatagcattTTGTAAAAGTTCGAAAATTCATAGTTTGGATCGGGAGTCTCTCGGCAGATTGGGGGTCGTGAATTCTACTAATCTACAGAATCTACAGAAACATAAAGCGCATTAGAACATCACCTGATGTGTATCATGTACAGCATATCTATACAGGCAGATTTGTAGGAACTTCAGTGGTCTTATGTGTAAATAGGAAACCACTCTCGTACGCATTCACACCcgcccacccacacacacacacacagacatacacacacatacatacactctTCCACTACTTCCTCCACTACTTCCTCCACTACTTCTTTGTAGCTTCTTTAGTGCACTCATCTACTCATTCTCTTAATTCAATCTGTACAAAGGGATGGATGGACCTTGAGAACGAGAATTCCCAGCTATTTCAACAGAACTCGAATTCAAAGATTAAAAATTGTGTAGTTTAAGATTGTGAGatgatgttctatttttttctaagtgTATTTGCTATAACGTAGAGCCCCTAGCTGGAACGTGTGGTGATCGATGTTTAGAGAGCCGTATTAGAGAACAGTGTTCTAGACGGTGTTCTATAGCTCATGTGAGGAACAAAAGGTGAGGAATCTGGAACGGCCTGGGAAATATATACAGTGACGTTACACAGTGCTAGCTCCTACAGACTCTCCAGGCTTGGTTTATGGCGAACGGTGACAGTGGACACTGAAGGTGCAGACTAAAGGATTtggctgttgtttttttgtttgtatttttgtacagtgagtacagtagtgtatactgtatatttcccaaatataaaacacacagtcCCCTTCACTTCCTGGTGATGGAAAACGTGCGGCAGGGCACGGAAGGTGTCGGGGTCACTGGCACGCGACGGGATCCTGAGGTTACACTGGCTGAGGGTTGGTGGACCTCTCCTGGACCAGCCTCTCGCTGAGCTCCCACAGGCTGAGGGCGGAGGAGGGATCCTGGGCCTGCTGAGACGGAAGACAGCGGAAGCAGTTGTTGAAGTACATCCCTCCCAGTCCCTCCAGCTCCGGAGCCACTGCGCAGTACACGGTGGTGGCCGCACCCTGTTGCTGTTgaggaaaaaacaaacacacacagaaaaaaaaaacaccgtcAGACGTCAGAACGTGAAGTACTGGAACATGCGAGGAGACAACAGCAGCAAGAACagaggaacattttaaaaaagtggaacatttaaaaaaaaaaaagactgaataagagtgagagtgagaggacTGACGCTTGGCCACAGCCTCACAGACTCATCAGACACATCAGACTGATCAGACTGATGAATGCAGGGTGTGAGAAGGTGTAAagtgtggacacacacacagctttaagAACCTGCATGCTGTAGATGACTGACAAACCAACCCGAGCCAACGCGAACCTAAAACCAACAAGTTAGAACCTAAGCCAGAGTGCTCAGGGCGTCTTTATGCAAGAAACAGCGACGCCAACAGAACATCGCTCACAATGCACGTCTCTTATGTGTTTTCCTATGTATTCCACTGAAGAAAACGCTGTAATCGAGGATCATTCGGCAGGATTTATGTCTTCACGCTGCACTCCTGCCAAGttttgtgcacacacacaaagacacacagacacacacagacacagccacacacaatGTACcgatgtatatactgtaaactgtgcaggaTGACTGGCATTGTCTAGTATAGTATACAGAGGCTTCCAAAAActccaaaaaaaatccattcattCCACTCATAACAGTCAGAAGGGTTATTATAAATCACTGCTGGGGGAGAGATATATCCGCAACAACATCTGTGAACAACAACACATGcagaactattattattatcagctttaaaaaaagaacagaccGAGACTACTAATGTTCTCAGCTCTCCAATATCAAATTTGAGCTCTTCTTCTTGTAGGTTTGGTGAGAGTACCCAGATAGCAAGCATTTATAGGCCCACTGGTCAGCACTATACTGATTGTTTGTCATTGCTTTAAATTCAACTTTAAATACGCCCTCGAACCACACAGATAATTGTCAAACATACCAGATCTAAgcagtttttaaactttttaagcaGATTTGAAGTGAGActtgaaggcatcaaaactatgaatgaacacatgttgatttatgtacttaacaaaaaaagtaaaatgactgaaaacatgttttatattctcgtttctttaaaatagccccccttcactctgattactgctttgcacactcttggcatcattctctcaatgcgcttcaagaggtggtcacctgaaatggttttccaacagtcttaaaggagttcccagaggtgtttagcacttgttggcccctttgccttcactctgtggtccagctcagattgggttcaggtccggtggctgtggaggccaggtaattttttgtttagtacataaaactccacatgtgttcattcatagttttgatgccttcagtgagaatctgcaATTTAAATactcatgaaaataaaaaaaaatgcattgaatgagaaggtgtgtccaaacttttggcctgtactgtatataaaaaagtaagggaaaaaatttaaatgaagaaaaattaGGTCAATTGGACTGATGGTGGAAAACAAGTGATAACAAATAGCACTTATGCCTGTATTGTGCTAGTCTTGACGTCAGTGGGCCAACAGTGGTTTGCTATCCTTGTGTTTTCAGGGTAGCCTCATGGCTAAGACACTAATCAGGCCCTTAAGCAGGTTTTGAAGAATCTCAGTGGTTGCTCTCCTCGTCTAAagcatctctctctttatctctgctcTCATTCATGCTCTCTCTCATCACTGGCTTGCTTTGTCTGTCACTCCACACGACTCCAAACGCCAACATTAGCatgaatatatatgaatatatgaatccagtcatatacacacacacacgctctacACCGCTGTAACTATTATTACTGTGTACATCCTAAACAAATGACTCCACTCCACCTCCCTGCTACATGCAGCTCCGCCCTGCAGAAGAACACCACCTCATTCTTCCTCCTCCATGTACTTTAGCAGCCTAATTGCACTGGAGGGTCTCGTCGGACCTCAGGCTTGGATTGTTTTCCTCTGTTTGTTCGTTTTGTTTTTGGGAAAGATggaaggaggaaaagaaaaacatgtcaGAAAGAATTAGAGCAGACGCCCGACTCCAACACTCCCACGTCTTTTTCACGCCCCCCGCTCTCTTCCACCCCCGTAGCCCCTTGCTGTAGAAAGCTGTCGCCCTGGCTTCACAGGCAACTCCAGCAGAAAGTTGACTTCTATAGGAGACACATGAAATGGGCCTGTTCTTTATCTTCAAACAGAGCCGGGTGCTGCACGCACACAGCTGAAAAGCGCAGGCCAGCGTTTAGGAGCAATCGGCTGGCAGCCATTGAGAGAAATGCGCTCTGACGCCCAGCTCTTTAAATGCTAGCTTTAGTGtgcgtgcgcacacacacatacacacacacacacacgcatatacacacacactcgcccaGTACAAAGACTCAGCCTCATTTAAGCGGACGAATCAACAGCTGTAGCCCAAGCTGGTGAAGCCTGCGACAGAGTGCTCgttagacaaacacacacacacacatacatacatacacatagacacacacacatgtagacacacacgaacacacacacacacacacacacagacagagcttGCAGGAAGAAAGCCAAGACTAGCCAGAAATTTGGTGAGCAGCAAACTTCATTCCCTCCTCCTGAGCTAAATGTGTGTGGACGCCcgcatgtgagtgtgtgtgagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagcgtgtgtTAAACCGAATGCCTTTTGAAGTACGCAGATGTCGTACGCTCCTTTGGTTACCGCGTCAATAAACATGACATCAAAAGGATGCATCTTTCTGAGTCTTACCTGCTTTTGGAGTGATAAGTTAATACACATTTTGAAGGTGGAAATATGAAAGGACGGAAAATGTCACTCAATCTCCGCGAGCACATGCAGGCACGTTATTCAATATGCAGAGCCGGGCCTGGCAGTATTTACTCATCtggtaattacatttaatagtcTGATACGCAGAAAGCACTGCCTTCTTTCAACTTAAGTTTTAATAACGGGGAAAAGAAGAAACggtgctggaaaaaaaatcctgcattCCAAAAAGTTTGCATCATTTGGCAAAGTCTACTAAAAGAAACCAAACTGGACTAAACAAGAAGTGAAAATGTGctgaccagaaaaaaaaatctaaaactaaaaagtttaagcccccaaaaaaaatccccaaaaagaagagagagtaaATAAGAAGTCTTATTAAGGCTCCTTTCTATCCAGCATCCTACCATCTTACCATCCTTTCATCCTGCACCCCTGTCATCTCGCCCTGCTGTCTTTATCACCCCCCCTCACCTCAACGTTCCGCCTCCACCCCCCTACCCACGCGGCCAAATATTTACACGCCATGCAGACAAGGCCACTTCATCAATCTCTTTACTGCATGTGCGACCGGCCTGGAAATCTTGTTTTTGGATTAAGCAAAGAGGGCGCAGGTAATAAGGGACCATCATACTGTTCCACAAGGCCATTTGTCAGGCTGTAGCGagcggcagagagagagagagagagagagagagagagagagaggttagggGAAGTTAATAAAttacccctctctctcactctcagccTCTCTTCCTTACCCTACCTAGCCTCTCTTTGTTAAGGCGAGTGTCAGCAGCACTCTGCATCCAGGCCTAAGCTAGGACTAGTACTTCTACTTGTACTTGCTTTAGGTATGCTTGCTTTTAGTGCATAAAAATGTACAACAGCCTTTTACACCGTCAGCAAGGGCGATTATCGGATTATAGAAGTGTTAGGGGTGCACCCAACAAACCCAGCCACACCAtcctccttaaaaaaaaaaagtgtcacaaAGTGGGACGACACCTGTCTCATCAAATCTTCTATTATTCTGTAACATTAATGATCTGATTCACATCCAGACAGTACCTGTCTAGCACACTGGCTTTAATATAACCAGCAGTGCAGCAGAGCTAGCCCCTCTCACTCCAGTTTAACCAGAGGGCAGTGGCTGCAGGCAGCAGTATTAGCTTACTAAAttgaaaccttgtttttaacAGAGTAAAGGGTGTGGTTTAATGGTGAGTGTGCACGCTCAGAGCACGGCAGAGCGGAGAGAAAGTGGGATAATACCTTGCTTGCAGAGGGCAGACCACTACGCTTTCATTCTCAAAAggcaggggtcagcaataggtgGCCTGCGGGTCAGAAAAttcaaaattctaaataaaacgcttttattgtgagcttttgtttacattcctcccctttctctctgtcgagctcggcgtgactttagttttcacTAGCCGgacagtggtagtgtattggacacGGGTTAGATCCCGCgcgaggagcggtgtgtttatttatttatttattttcctttcctCTTGGATCTACCTGCTTTgggatcaactgttctgcaattgggttcaacaaccctctggactggagagctactagtagcactgtagcactccatcacaatacacttcattttccaaaacgtACACGGAATGGCTTGAAAAATATTTGGCCCGCGGCCAAAATTTATCTCCGACCCCTGGCTTCAAGGTGTTTAATGGTTTACTGTCCAAGATCTGAACATTTTTAGCTTATCAGAGACAAACTCccactaaaaaaagaaaaatacaacaaaaacacaactttttgttttcatATTTAGGGGAGCTGGGACATGTTTTGAGTGTGCTTGAGCACCCTTAACAAAAGGGCTAGTGACACCCCTGATtgtcactttcagttttcagaacacaaaaatgagtatatatataaaaaaagagtagaaaaacaagcagaaagcagaaataacaaaacaccGATGACTCTCACTCTGATATTGGAAGTGGAACTGCTGTAAAGGGTTCAGGATGTGCGTGGAACAGCGTTCATGTCCGCCTCCGCTaacgccgccgccgccgctgttGTATCTGCTTCTGCCTGGCCTCTTCATGTGCCCTTGTTTTCACCTCTGCTTGATTGGAAGAGCGCAAACACTCTCCAGACTAGCGCCCATACTCCATTACAGTAGAGTGCGCAGGAGTGCTAATGCGTTCCGTAATGAAGCTGGGTGAAGACTAGCGTGACTGAGATTATCCACCGCTAATGGGGTTGGAGTGCGATCGCGGCGCTAGGCTAGCGCGCCGCTGTCCCTTAGCCAAACAATGGATTGAGACGGAGCGCAAGCCGCTTTAAGACGCTTTAACCCTTTCCCAAAGCTCCAGCCTAGTCTTTTCCAAGAAGATTTGGAAAGCCGGACAAAGACGCGGCTAAATCCCGGCAAACCCAGATTCGCAGCGATCCGCCGAGCGAGCTAGCGCCGAGCTAGTGGACAGCTTACACGACTTTACTGCAGTAATCGCTGGCTGAGTTACAGCTTCGCCAGCTCATTTTTGCTTTATTAGAGAGCCGTACCTCGTCTACATTTCCATCTACGCTTCTCATATCCCTCTCCACTCAAAAGCCTCCCCGCTAAATATAGATCCGTGATtgatccagagagagagagagctagcgCTAGCATCCAAACACTGCTTCCTCTCCCCCTCAGCAGTGCAACCACAGTAAATCGGCCCGGAGAGAAGCTCGGCGTCTGGCTCTGCGTTTAGCGGCGCAGGAGTCGGGGTGAGATTGGCCTGTCAGGCAGAATGAAAGCAGCGCTATCTTACTGCTCTTTCTGCTCTTTACACTCAACCTCCTGCCACTTGACCTCAGTGAACCCTGTGGAGCGATAAGCTCTATGAGATAGTACATTAACATGCAGAGCCACCCACCGCCCCCATTtatcacatatacacacacacacacacggcctgttttgcaaagaaagagagagagagagagggaaaaattGAGGGATAAAGAGGGGGTAGAGAGTGGGGGAATAAAATGGGGTTCAAATGCtccatatatatgtatattggtgtaaaaagtgtaaatttatatgttttttgctGTCATCTGTGCGAGCCCATTGGTGGGCATTTGTTCACATGAAgagggttattttatttaacttttcctttatttattttttaaacctgtGAATCaccatagaataaaaaaaaaacacgttttaataaaatcaaatttttgCAGCAATACTATACTGATATCAAGCCAAAGCAACTCAAAACGCAGATAAAACTCTCGACACTCAAGGTAACAactcaataacaaaaaaaaaaaaaagaaaaatccaaaatccaaaaaagATTCAAGTACAAAGATGAAGCCAATTAGACTGAGTGAAAACTCTGAAACCTTTTAGCTTTAAGCAACTGCAATAATTCTCTCTGGAATCTTCTGTCCTGATGAATCAAAGTCATTCAAAGTCTTCCAgttctgatttttcttttttaaaaagctaaaaaaaattgaaagatTTAAAAGAATTACTTTGCAATACTGAGACTAGGggtgtatttcttttttgtttgtttttttctttttttaagacttCTGCAGGAGACAGAATTGGTATTATTGAACTTTGAAGCTGTAAAATgatgttttctattttattctttaagtaTTTAAACTAATGTGATGTAAGGCTCCGCCTCCAAGCCccacactgaactgaactgaactgaactgaactgagtgcacacactgaactgaactgtatttactgtacataatgtaagttaataataataataataatcatcctCCATAGTACTGAGTACTAAGTCTCGTGTTGGGTGACGGTTTATAGTCGGGACAGATCCCAGTAGACCCcgtgtcctcctcctcctcctccaagTAGGCCGCCTCTAGTGCTATGCGCCACAGACCCTTTATACAGTATTGTTTCTGTATTTGACCACATGTACGCCAGCTCGTCCTCAACCCGTGTGCTCATAGCATCGCCCGAGTATCTACTGTATGTAGCAGAGCTGCTAAAACCAGTGATGACCATAATGGGTAAACGTGATAGCCAACcgttttctattcttctgtatGAAGGTTGTGTTCAATTATCTCTGCATGcaatgattttatttgtttgtttgtttgtttgtttgtttttagagtGCCATAAAACCCCCCAGTCGTCATTAAACAAGAACTGTAAAGATGTCCAGCTCACTGTCAGCTCTTCATCACTGTAAATATTTGTACATACCAAACAGCTATGCATGCTGATATTCTAGCAATTATTTCAGGTACTTTTATAATCAAAAAGTCTCATGTGGCATGtgctaaaaaacataaataataataaaacacaataaaaatcaaacaaaataaaaaaaaaaaaaaaacagaaagtatGTGATTTGTCGAGCAATTGTCCGCTGATAAAAAGGTGGATGTggaaaattgtgattttttttaatttgttctttttttttttttttgcctactGTAAGTGGTTGATTCCTTTGGCTGTCATCCCcattgtgttttgtttcttgtaaacctgtcttaacaTTGTAAAGGTAGGGTTGAGGCAAATGCAAAAAGCAAaaaggaataataaaaaaaaacagagcagagGGGTACAACCACTTCTGAAACTGAAATTATGGTTCtatgctataataataataatcataaaaaaatcatatctacGTAAGTagaaacaaaatacataaaaaaagaaagaaagagaggaattcTATTTAACGCTGTGGAAATGttgaattcattcattcacaggTCTGGCTATATCAGTACTGACATTATGACATTATGAACAACAGTGGCAACTTTATTCCCGTTTCTTTATTCCCGTCTAAGTGCCAGACGTACAGTAAAatcagaaagagagggaagatggaaatgatgtttttctttattttataagaaGCACTTAAGGCTAAGAtgttaaagaagaagaagaaggagaaggagaagaaagtaCATTGAATTTTATGTTCAATTCACAGCTCCACATGCAGTGGTAGGCTTTCTTAAAAACCCAAAAGTATTATGATTTGCCTCAGCCCTGTGCAttaaactgtacatttttattgaaatgAAAGACTATTCTATAAAGGAGAGGTTGTATCCTGTGAAGGAAGACGGACAGTTTTTTTAggaatgtttatttttcattcatgACGATCACGATAGTTGGAGGTGTCTGATTTTTAATCTGTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101473 lncRNA downstream 53284 20568847 ~ 20569357 (-) True G75286
TU101445 lncRNA downstream 320096 20301885 ~ 20302545 (-) True G75270
TU101415 lncRNA downstream 337999 20278476 ~ 20284642 (-) True G75243
TU101437 lncRNA downstream 346197 20272775 ~ 20276444 (-) True G75265
TU101400 lncRNA downstream 436154 20181150 ~ 20186487 (-) True G75232
TU101478 lncRNA upstream 1987 20747698 ~ 20748079 (-) False LOC103032014
TU101483 lncRNA upstream 48773 20794484 ~ 20794959 (-) True G75295
TU101597 lncRNA upstream 167120 20912831 ~ 20914086 (-) True G75357
TU101612 lncRNA upstream 233691 20979402 ~ 20985652 (-) True G75366
TU101613 lncRNA upstream 240483 20986194 ~ 20986762 (-) True G75367
XM_022672308.1 mRNA downstream 368818 20243366 ~ 20253823 (-) False LOC103029688
XM_022672307.1 mRNA downstream 368818 20243366 ~ 20253823 (-) True LOC103029688
XM_022672304.1 mRNA downstream 415943 20192525 ~ 20206698 (-) False LOC103045029
XM_022672310.1 mRNA upstream 94793 20840504 ~ 20863315 (-) True ankrd27
XM_022672311.1 mRNA upstream 123976 20869687 ~ 20877379 (-) True LOC103032734
XM_007244272.3 mRNA upstream 157367 20903078 ~ 20905520 (-) True LOC103033388
XM_007244273.3 mRNA upstream 163168 20908879 ~ 20910858 (-) True LOC103033709
XM_007244278.3 mRNA upstream 178027 20923738 ~ 20928274 (-) False LOC103034889
TU101364 other downstream 522391 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 590614 20027162 ~ 20032027 (-) True G75207
TU101215 other downstream 756659 19859694 ~ 19865982 (-) True G75100
TU100809 other downstream 1549753 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 1682177 18939174 ~ 18940464 (-) True G74791
trnat-agu_2 other upstream 150392 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 524418 21270129 ~ 21273017 (-) True LOC111193105
XR_002650263.1 other upstream 1710620 22456331 ~ 22513724 (-) False LOC103024007
XR_002650267.1 other upstream 3438858 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 4168587 24914298 ~ 24920365 (-) True G76377

Expression Profile