RNA id: XM_007244268.3


Basic Information

Item Value
RNA id XM_007244268.3
length 4108
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC103032014
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20622641 ~ 20748208 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acagtgatgtaagtaTATTGTTAACTCTCCgttaaccataggattttctcatttaagtgagctatggtttactAAATGTTGAATGTATAAagttgaaacaacgttgccaTATAAACGTTGGtgcacttttcaaaatcaacacaaatccaagatgattcaaccataacatcgaTGTTGATGCAAAGTTGAAATGCCAGCTTAGAAACAGAGcacttgtgtgaaaaagagGGTCAAAATCAAGTCCTGCTGTTGTGATtccaagaagaaaaaataagccTTGTTTTGGGTAAAGTGCGTTTGCATAAAAATGCGTTAAGTTCCCTCGTTACTGGAGCCTAGATCATGCAACACGTGCACCTgaagctgcacttaaaatcatGCAGGACGTCCTGTGATTTAACATCATTGCAGATGACTGTTTGAGCCTGCTGTGAGTTATATGAGGTCAGTAGCTTATTTGGACTTGTGTATTATCAAATATTGATAATTATCAAATATTGATAATACTTCTCAAATTTGTACATTTAGCTTGTTGTAAGATCAAAACGGTTGAACTAAAGTAATCTTTGGGTCGTTTTCTCAGTTGCCGTTTGTAAACGTTCCGAAAGGTGGCActgttgtgttttcacactgggCAGGATTGACATGCTGGAACTCAGACCACGATTTATTCCACTATAAAATGACACAGTACCTCATAGTCTAACCACAGTGCTTTTCTTCTAATATTCCTACGCTTAGTCTATTATTATAGTCTATATTCCTCCTGAATGCAACATCTCTCACCAACATAGGTTAATTCCGACTCTAATTTCAGGTATTTAATCACTGGAGTACACATGTAATTACATTTTCTCAATTATTAcagtacaaaaaatacatactgCATCTTTGTGAATTTGGTGGGTTACCTTATAAAACTGAAATagcctttttgtttactacattacGTTTAGGTATCTGACAAAAGTTTTTTTCAGACAATAAAGGTGGAATTTGACCGTAAAATCGACTACATGGCGTTAACGTGGTGTTTCAGTCCACATAAATCAATCCGCCTAAACTGATTTCCTTGATATGGGCTACTATTTTCTATTGTAATACTTCAAACGGTTAATTCACACTGACTGtcacaaaggaaaaaaacaagctgaaaaacAAGCGTTCTTACTGTTGTTTTCTCAAAGCAGATCATTAATATTTCGCTAATTTGCTGTTAAATAGTTAAAAGCACGAGCTCCGGTCTGAGTCCGGACAAACAGTTGAGGCAAACTTTTGTTTCTTCTCTAATATGTAAATGAGCTTTCAGATGGAGCGCTCCCATTGGCTGCGAGTCCCAGTCCAATTCCTATTTCAAACGTGACGTCAGGGCAGCTATAAAACTCAGCATTGCTTTTATACTCGTCTGCTGGGCGATCCTTTAAAAACTCCACTACACGCCCGGAGTGCTCTTTTTTCCAGCAAAAGCAACAATTTGCCAGTCACATGCACGCTAACCTCCTCAGTTTTACGCAATTATtgtagaaaaaagaaagaaagaaaaaagcgaAGCCATGAAGTGTTAAATGTTTCCTATTCAGACGCGCCGAGACCCGCGTGCTGAGAGAGGGGAGACGGGAGAGACGACAAAACACCCCATCCTGGCTGCTCATTTATAACACAAATCCgcagtcttcttttttttttacctcttccTCTCTCGGTTTTgaagaattaaataaagaaatcaagCTGGCTCACACTGTCTCGAACCCGACCAGTCTGACAGCTGCTCTTCACCCCCTTTGGAGGACTGTCAACAGCAAAAGGATGGCATCAGAACTGGCAATGAGCAACTCCGACCTGCCCACCAGTCCCCTGGCCATGGAATATGTTAATGACTTCGATCTGATGAAGTTTGAAGTGAAAAAGGAGCCGGTGGAGCCCGATCGCAGCATCAGCCAGTGCAGCCGCCCAGTCGCCGGGGGATCCGTGTCTTCCACGCCGATGAGCACGCCCTGCAGCTCGGTTCCCCCTTCCCCCAGCTTCTCGGCGCCCAGCCCGGGCTCCGGGAGCGAGCAGAAGACGCACCTGGAGGACTTCTACTGGATGACGGGCTACCAGCAGCAGCTCAACCCAGAGGCGCTGGGCTTCAGCCCCGAGGACGCCGTAGAGGCGCTGATCAGCAGTAGCCACCAGCTGCAGACCTTCGATGGCTATGCCCGCGGGCAGCAGTTCGGCGGCGCGGCCGGACCCGGTGGCGCTGTGGCCGGAGAGGAGATGGGCTCGGCGGCCGCGGTCGTCTCCGCCGTGATCGCCGCCGCGGCGGCGCAGAACGGCACGccgcaccaccaccaccatcaccaccaccaccacgccacgggccaccaccaccaccaccaccatcacctcaACGGCGCCACGGCACCCGGCGTTCCCAGCGGCGGAGGCGGCGGAGGAGTCGGCGGCGGGGGCTCGGCGGGGAGCCTGCAGCACGGGCGCCTGGACGACCGGTTCTCCGACGAGCAGCTTGTGACCATGTCGGTGCGCGAGCTGAACCGGCAGCTGCGCGGCGTCAGCAAGGAGGAGGTGATCCGGCTGAAGCAGAAGCGCAGGACGCTGAAGAACCGCGGCTACGCGCAGTCGTGCCGCTTCAAGCGCGTGCAGCAGCGGCACGTGCTGGAGGGCGAGAAGACGCAGCTGCTGCAGCAGGTGGACCACCTCAAGCAGGAGATCTCCAGGCTGGTCCGGGAGAGGGACGCCTACAAGGAGAAGTACGAGAAGCTCGTCGGGAACGGCTTCCGAGAAAACGGCTCGAGCAGCGACAACAACCCTTCCTCTCCAGAGTTTTTCatGTCCGGAGAATGGGGGTCAGCCTCCAGTTTAAGAATGATTCGATAATggaatcaaactttttttcaTCAACGACTTTCATGTCattaatgtctgtttttttattctaccaCCCCATCATGTGTGtgcttttctgtctgtctggggTTTACGAGCTTTGGGCTGACAGAGACGCGTTGACAAGGACCACTCTGCGCATGCGTGCCCGAAACTTTCCCCACGCATCCACGTTtatattaaaacagtttttaagcaTTTACAATGCTTGAAAACGACAGAACGGGTTTATTTATGCTTTCATAGAAAGGGAAACATCACCACCTGTTCTTTCACATCCTTCCCCATTTTGTATTTCTTgtaaaaatgtgtcaaaatcGTGTAAATTATTAAGGATAGATCCTATGTAACCGTTCCCACACGCTGGTCGTGCTGGCTGACGggatttcttttctttaaattaactttttggACTTGTCCTTGGCTTTACATCCATTCTTCATCCGGTGGGCTGTCCACTTTTTTGGGACTCTGAACAAAAAAGTTACACCCGTCTCTCCCCGTGAAGCTCCACACTGTCTCCATGCTTGTCTTCATGTACCAGAATTTGTAAAGGTTGCCACGCTGGATTTTCTGCGATGAAAACGGCTGAAGACTGTATTCATGGCGAATGTTTGGTCCTCTTGTTCCACGGTGTAAAGAAAGTGTTGCGTTGCTGAAAGTGTGTTCTTTCACCCACCTGTAATTTCACCCTGAGACTCTTTTGTAGGCTTTTGTTGTGTGAAATAGTTATTCAGTATGTTAAAATCAAGCTACAGGTCTGTGCGTTACAACATGCTAAATATCACAGGTTCATTTTATCTGAATTCATGTTAACTGCACTTAAACTGCTGTTTAATGGTCTAGTTTATATCATTAATCAGAGAGATGCTGTCTAATTactaaaacaagttcatttagGCATGCAGCTAATTAGCCCAACGCTTTCACAAGTGTACCTCAGAATGTACCTCGCTGTGTGCCAGCCCGAGGACTGAAACATCACGGGCTGGGCTGCTCTGTACCTTTACCCGCTGTAGATCACACACATATGGACAGATGAACACTGTTAATAGTGAGGGAATTTAACGAAACCAGCTTATATAGTCCTGGCTCGTCAGGAGCCATTTTGTAGCCCTGTATGTATTTTGGTGTTGATTCGTTTGGCAGCTACTGACTGGAGCCTATAAATCCCAACCTCGCCAAATATAGTTCCTCAATAAATTTGTAATTATGAAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101473 lncRNA downstream 174556 20568847 ~ 20569357 (-) True G75286
TU101445 lncRNA downstream 441368 20301885 ~ 20302545 (-) True G75270
TU101415 lncRNA downstream 459271 20278476 ~ 20284642 (-) True G75243
TU101437 lncRNA downstream 467469 20272775 ~ 20276444 (-) True G75265
TU101400 lncRNA downstream 557426 20181150 ~ 20186487 (-) True G75232
TU101483 lncRNA upstream 46276 20794484 ~ 20794959 (-) True G75295
TU101597 lncRNA upstream 164623 20912831 ~ 20914086 (-) True G75357
TU101612 lncRNA upstream 231194 20979402 ~ 20985652 (-) True G75366
TU101613 lncRNA upstream 237986 20986194 ~ 20986762 (-) True G75367
TU101673 lncRNA upstream 293899 21042107 ~ 21066403 (-) True G75419
XM_022672308.1 mRNA downstream 490090 20243366 ~ 20253823 (-) False LOC103029688
XM_022672307.1 mRNA downstream 490090 20243366 ~ 20253823 (-) True LOC103029688
XM_022672304.1 mRNA downstream 537215 20192525 ~ 20206698 (-) False LOC103045029
XM_022672310.1 mRNA upstream 92296 20840504 ~ 20863315 (-) True ankrd27
XM_022672311.1 mRNA upstream 121479 20869687 ~ 20877379 (-) True LOC103032734
XM_007244272.3 mRNA upstream 154870 20903078 ~ 20905520 (-) True LOC103033388
XM_007244273.3 mRNA upstream 160671 20908879 ~ 20910858 (-) True LOC103033709
XM_007244278.3 mRNA upstream 175530 20923738 ~ 20928274 (-) False LOC103034889
TU101364 other downstream 643663 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 711886 20027162 ~ 20032027 (-) True G75207
TU101215 other downstream 877931 19859694 ~ 19865982 (-) True G75100
TU100809 other downstream 1671025 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 1803449 18939174 ~ 18940464 (-) True G74791
trnat-agu_2 other upstream 147895 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 521921 21270129 ~ 21273017 (-) True LOC111193105
XR_002650263.1 other upstream 1708123 22456331 ~ 22513724 (-) False LOC103024007
XR_002650267.1 other upstream 3436361 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 4166090 24914298 ~ 24920365 (-) True G76377

Expression Profile