RNA id: TU101473


Basic Information

Item Value
RNA id TU101473
length 351
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G75286
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20568847 ~ 20569357 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagcattgtggacgacctcacccatccctcacacggactcttcgctctgatgccgtccggcagaagatacaggagcatccgagccttcacccacacacacacccagtcagcacacagaggctgacatgactttatttgctgcactcttaaaaactataaactctacctcagtaactgctgtgattatatatgttacagtatgtcacacatctctgcaccttatccccactatacactttattataccgtatcggtactgcactgtcctgtctttaaattgtctcgtcttttgtatttattgtatttattgttatttagtgttataattttataattttatgttgcactgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101445 lncRNA downstream 266302 20301885 ~ 20302545 (-) True G75270
TU101415 lncRNA downstream 284205 20278476 ~ 20284642 (-) True G75243
TU101437 lncRNA downstream 292403 20272775 ~ 20276444 (-) True G75265
TU101400 lncRNA downstream 382360 20181150 ~ 20186487 (-) True G75232
TU101390 lncRNA downstream 410643 20153547 ~ 20158204 (-) True G75224
TU101461 lncRNA upstream 53284 20622641 ~ 20745711 (-) True LOC103032014
TU101464 lncRNA upstream 53284 20622641 ~ 20745711 (-) False LOC103032014
TU101478 lncRNA upstream 178341 20747698 ~ 20748079 (-) False LOC103032014
TU101483 lncRNA upstream 225127 20794484 ~ 20794959 (-) True G75295
TU101597 lncRNA upstream 343474 20912831 ~ 20914086 (-) True G75357
XM_022672308.1 mRNA downstream 315024 20243366 ~ 20253823 (-) False LOC103029688
XM_022672307.1 mRNA downstream 315024 20243366 ~ 20253823 (-) True LOC103029688
XM_022672304.1 mRNA downstream 362149 20192525 ~ 20206698 (-) False LOC103045029
XM_007244269.3 mRNA upstream 63282 20632639 ~ 20748208 (-) False LOC103032014
XM_007244268.3 mRNA upstream 174556 20743913 ~ 20748208 (-) False LOC103032014
XM_022672310.1 mRNA upstream 271147 20840504 ~ 20863315 (-) True ankrd27
XM_022672311.1 mRNA upstream 300330 20869687 ~ 20877379 (-) True LOC103032734
XM_007244272.3 mRNA upstream 333721 20903078 ~ 20905520 (-) True LOC103033388
TU101364 other downstream 468597 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 536820 20027162 ~ 20032027 (-) True G75207
TU101215 other downstream 702865 19859694 ~ 19865982 (-) True G75100
TU100809 other downstream 1495959 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 1628383 18939174 ~ 18940464 (-) True G74791
trnat-agu_2 other upstream 326746 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 700772 21270129 ~ 21273017 (-) True LOC111193105
XR_002650263.1 other upstream 1886974 22456331 ~ 22513724 (-) False LOC103024007
XR_002650267.1 other upstream 3615212 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 4344941 24914298 ~ 24920365 (-) True G76377

Expression Profile