RNA id: TU101501



Basic Information


Item Value
RNA id TU101501
length 1640
lncRNA type inter_gene
GC content 0.48
exon number 9
gene id G75309
representative True

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20869710 ~ 20873881 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


taaataaaattcCATATACACACCATTTTATACAGACAGAAAGGGTGAAAAGAAAGCCATGACTACAAAAGGCTACAAATAAAAGGGATGAAGTGAgtacattagttaaaaatatcaCATCCTCTGTAAACTCGCTGCTGCTACACAGGGAACCGGATGATTTAATCTGCATTTCAGAGGCGATTATAGGAAGAGTGTCCTCCCTCATGGACCCGACAGTAGTCCTGACCAGCTAGAGCCCTTTTCTTACATGGCTGTCCCAGGCGTGTGGTCCCACAACACAGAGGACGACCAGAGAATGAACTGTTGCTGGCAACTGACTGGTTAGGGCTGGAGCTCCGAGACTGGTTCACAGTGTCCAAAACGCCTCCCAAGTTTCTCTGGGGGATGCTTTCAAAACCAACTCTGTGGCTAAGGAGAGTCTTCAGTCTGGGTGTAGAATGGCTAGAAGTGCCCACAGAAAGAGGGAGTTCAGGAGGTGAACAAGCGTTAGATCGAGACATGGCCACCATGCAGGGATCACCAGTCATAAAGCTGTCTTGACCAGGACATGGCTCTTCCGATTCCAGGTCATCATCTAGAAGGGTTGAAGAGCTGGCTGGGCAGTATGCTGGTTTGGATTTTTTCTCCAGTGTAGTCTCAACAGGAGGAGCCAGGAGAGCAGCAGGGGTGCACTTTTTGCCATTAAGTTTGGAAACCATCCACAGCAACTGCAGCAGAAACCAGCGAGCCAGCGAGAGTGTGAAGAGGAGCAGCGAGAGTGAGACCAGGTCCAGAGCTGACTGCTGATTGACTTCGGCGATGGCGTTGACTGGCACAGTGATGAGCAGAGAGACGCGAGAGAAAGTTGGACATTGCAAGAAGGACAGAAGCACTGCACTAAACAAGAAATACCCAGCATGCATCACACAGGTCCACAGGGCACGCAGACTGAGacCAGCCCATCCAAGGTAGCCTTGGATAATGTGCAATCTATCTTCTAGCCGGGTCTGCATGCTATCCAGGTACGTCAGCATATATCCCAGTGTGCCATTCATGCGCTCCAGCTTCCCCATGAGTTCAGAATAGAACTGGGCAGTTGTGTTCTGCTGCTGTAGAACACCATTCAAATTGAgctCCATTTTACTGTAGATCTCCTGTGCACGGCCTCTAACTTCAGCCAGGTCATCCAAAATGGCCCGGTGACCTTCTTGCACCTCTGTACCTTGGCCTTTCAACTGTTCACTCACATTTTCCATTCTGTGGGTAATTCCTTGTATGAGCTGCGCCACCAGCTGTTGGCCGGTACTTATGAGGGCCTTCTCTTGAGCCAGCCTCTGCAGATTTGAAGAGATTGAGGCATCCAGTTGCTCCTGCCCCTCTTTTAGCACCCCCTGCTGGACCTGTAGAGCACTGTGGCCTTCCATCAGTTTATCGAGGGATGCAGCAGTCATTTCCCGAAGTTCTTGCTGGCCCTCCTGCACAcgcgtgtacacacacacagtcacagacAAACAACTAACAGGCAAAATTAACCCTTGTTTTAAATCATGACATGtttacaactatttaaaataaagcactCAACTGAGCATTTTTATACATGCTTCTTTATATTTACATCCTTTTTGTATTGAGTGCATTAAGAGCACCAATCCTGC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU101490 lncRNA upstream 28729 20840533 ~ 20840981 (+) True G75300
TU101332 lncRNA upstream 292465 20576278 ~ 20577245 (+) True G75192
TU101324 lncRNA upstream 417258 20452187 ~ 20452452 (+) True G75184
TU101308 lncRNA upstream 581663 20285164 ~ 20288047 (+) True LOC111193104
XR_002650258.1 lncRNA upstream 582298 20284677 ~ 20287412 (+) False LOC111193104
TU101511 lncRNA downstream 13274 20887155 ~ 20910244 (+) True G75313
TU101513 lncRNA downstream 29195 20903076 ~ 20910244 (+) False G75313
TU101507 lncRNA downstream 65470 20939351 ~ 20941050 (+) True G75310
TU101527 lncRNA downstream 71732 20945613 ~ 20947024 (+) True G75323
TU101557 lncRNA downstream 102086 20975967 ~ 20976313 (+) True G75342
XM_007244266.3 mRNA upstream 237167 20289830 ~ 20632543 (+) True wwox
XM_022672309.1 mRNA upstream 585037 20278577 ~ 20284673 (+) True LOC103030013
XM_007244265.3 mRNA upstream 593155 20253846 ~ 20276555 (+) True LOC103030550
XM_022672299.1 mRNA upstream 639710 20209932 ~ 20230000 (+) False tdrd12
XM_015604555.2 mRNA downstream 3536 20877417 ~ 20880566 (+) True faap24
XM_007244271.3 mRNA downstream 7949 20881830 ~ 20895098 (+) True LOC103033048
XM_015604493.2 mRNA downstream 38900 20912781 ~ 20915900 (+) False ccdc34
XM_007244274.3 mRNA downstream 38926 20912807 ~ 20915900 (+) True ccdc34
XM_007244275.3 mRNA downstream 43625 20917506 ~ 20923676 (+) True LOC103034349
TU101298 other upstream 661788 20203619 ~ 20207922 (+) True LOC103028745
TU101007 other upstream 1336637 19527991 ~ 19533073 (+) False LOC103044129
TU100801 other upstream 1784154 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 2414513 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 4581381 16286676 ~ 16288329 (+) True G74169
TU101630 other downstream 149375 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 214741 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 376586 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 1881271 22755152 ~ 22772561 (+) False LOC103028957
TU102309 other downstream 2613649 23487530 ~ 23487870 (+) True G75938

Expression Profile


TU101501 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 8.
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TU101501 Expression in each Bioproject

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TU101501 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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