RNA id: TU101507


Basic Information

Item Value
RNA id TU101507
length 1677
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G75310
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20939351 ~ 20941050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGAGGTACAAAGTGCATTGTCAGTCTatcttatattaaaaaaataataacaataaaaacattggaGTGGTAGTGTTTAGGCTTTGGCCTTTTTCTGTGATTGTGCGCTCGTCAGATGATGCACAGTTCTACCTGAACGCTTTTActtcctctttcttcttctgatTCTTCTATCTGGCCTGTGACTTACTATTCTTTTTGTTGCCTCAATTTATTCCACATTCCACAatcttttatcttatttatccAGTACATTTCTGCACCAGCACAGCCTTTTCCTGTACTGAGTGATCAAgagcagcactgtgtttaaaacgCACTTCATAATCCAAAATCTGATCACTGTAAACTCTATAGAGTCTGCCAATATTTTAGTCAATGTGTTCACATGAACTTGGGTAAGTTTACTCAGACAATAGTCAGATTTTTGTCTTTGGAACCAGCCATTAATCTCACTAAATAAGTCTTGTAAATCAAAAACTTCATGCCtgcgtttttatttttcatcaaacCACAATATGAGGGTTATTTAAATCTTTCATTTTCAgctatgctatttttttttaaaatgtggtgTCCATCTTGTGAGTGCTGAGTTCTACGCTGCTTGCTTATTTCCAGTACcattgtctgttttttaatcatgccATACTAAGAATACtaagatttttgttttaaataatcagAAAACTGCGGTAATCAGattttgaatgatttttttgtaCAAGTTAGAATCTACAGGTAGAATTGTGCATCATAGCTTTAACTTCTTTCATTTCTTAGCACTGTAAAAATAACTTAAGTAACTCTCACAACAGCTTCTTTAAAACCTAGGACCAATAAAGATTACTAAACATCCTGATACCCAATAATATTAGACCAtatcattttacatttatatttcaaTCCTATAATCCCGTAGTTTTCATTTATGAAAAATATCTCTGCATGAATAACTTTCCtgaacttaaataaacagaagaaacTCACAGTGTTAACAAATATAAATAGTGTAGCACTGAGAACTGAGTTACCTATAAAAATTTGcgcgtttgttttttttatatatttcttcttctttttcataGTTTCTCTTCATAAAAGAGTTATGTTTATGTTATCCAGGTGCTaaatgaatttcctAGCTGTCTTACATCTTCAGGACCTCATCAGTTCATATTTCAGCGAAGCAATGTCCAAAGCATAATCGCTAATTATTGGTGCATTATTGGCAATCAATACCGACTAAAATGTGTCAGTATTGACTTTGTCTACTTTCGGCCAACCAATACATCGATCAGGTcctatttaaaatgataaactggtaaacttcactctctctatatacAAATATACCAAACTATTACCGTTATTTCCTCTGTAAATCAGAAGTGTACAAATCAACAATGTTAAATTCTTCTCATATTCTCTGTATTTTAGGAAGGTTTAAGGTCATAATAATTGTGCAAAGCTCCTAAGCACATTGGCCCTTTTTAATGTGAGGTCTACACTCTGGTCAGATCATGTAGTTCTTCTTGAGAACCTCCAGATACTGCTGGGTGGCTCTGCTCAACGGATCCTGCTGCTCCAGATTAATGTTAAAATTCAGATTCTTCTGAGACTCAGAGGCAGAACCCACTGGAGACATTCGGGCCGATCCACCATCCAGCTCAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101511 lncRNA upstream 29107 20887155 ~ 20910244 (+) True G75313
TU101513 lncRNA upstream 29107 20903076 ~ 20910244 (+) False G75313
TU101501 lncRNA upstream 65470 20869710 ~ 20873881 (+) True G75309
TU101490 lncRNA upstream 98370 20840533 ~ 20840981 (+) True G75300
TU101332 lncRNA upstream 362106 20576278 ~ 20577245 (+) True G75192
TU101527 lncRNA downstream 4563 20945613 ~ 20947024 (+) True G75323
TU101557 lncRNA downstream 34917 20975967 ~ 20976313 (+) True G75342
TU101628 lncRNA downstream 105765 21046815 ~ 21047280 (+) True G75381
TU101654 lncRNA downstream 206758 21147808 ~ 21148349 (+) True G75403
TU101639 lncRNA downstream 249716 21190766 ~ 21195771 (+) False G75390
XM_007244279.3 mRNA upstream 3264 20928290 ~ 20936087 (+) True ccdc77
XM_007244275.3 mRNA upstream 15675 20917506 ~ 20923676 (+) True LOC103034349
XM_022672312.1 mRNA upstream 15675 20917506 ~ 20923676 (+) False LOC103034349
XM_015604493.2 mRNA upstream 23451 20912781 ~ 20915900 (+) False ccdc34
XM_007244274.3 mRNA upstream 23451 20912807 ~ 20915900 (+) True ccdc34
XM_022672313.1 mRNA downstream 33740 20974790 ~ 20990577 (+) True LOC103037268
XM_007244289.3 mRNA downstream 50708 20991758 ~ 20998066 (+) True LOC103038014
XM_007244405.3 mRNA downstream 76404 21017454 ~ 21021871 (+) True LOC103046250
XM_022672316.1 mRNA downstream 106846 21047896 ~ 21057840 (+) True thoc5
XM_007244297.3 mRNA downstream 106846 21047896 ~ 21057840 (+) False thoc5
TU101298 other upstream 731429 20203619 ~ 20207922 (+) True LOC103028745
TU101007 other upstream 1406278 19527991 ~ 19533073 (+) False LOC103044129
TU100801 other upstream 1853795 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 2484154 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 4651022 16286676 ~ 16288329 (+) True G74169
TU101630 other downstream 82206 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 147572 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 309417 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 1814102 22755152 ~ 22772561 (+) False LOC103028957
TU102309 other downstream 2546480 23487530 ~ 23487870 (+) True G75938

Expression Profile