RNA id: TU101557


Basic Information

Item Value
RNA id TU101557
length 347
lncRNA type intronic
GC content 0.30
exon number 1
gene id G75342
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20975967 ~ 20976313 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttcatgcagaattatttgcaTTAAGAAAGAGGAACCACATTATTTGCaacagctttattatttttacaacaaacatGAGATGATATATAACTTTAAAGACTGATATCAGAATATAGAGAGGctacatacagaaaaacaaagtacagaacacatgtaaatcaactaaaggaaaatagtacattgcacatgtaaataaaccaaagaaTCAGCACAGATTACATAAAATGGGGTTTACTTGTGTAGTTCGGAAGAATGAACCCTGGGGAATACAAAAGCAGGAAGAGAATAAGAAAATTGAGACATGATTGCATTTAATACatgaatacaattaaacattttggaaacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101527 lncRNA upstream 28943 20945613 ~ 20947024 (+) True G75323
TU101507 lncRNA upstream 34917 20939351 ~ 20941050 (+) True G75310
TU101511 lncRNA upstream 65723 20887155 ~ 20910244 (+) True G75313
TU101513 lncRNA upstream 65723 20903076 ~ 20910244 (+) False G75313
TU101501 lncRNA upstream 102086 20869710 ~ 20873881 (+) True G75309
TU101628 lncRNA downstream 70502 21046815 ~ 21047280 (+) True G75381
TU101654 lncRNA downstream 171495 21147808 ~ 21148349 (+) True G75403
TU101639 lncRNA downstream 214453 21190766 ~ 21195771 (+) False G75390
TU101637 lncRNA downstream 216350 21192663 ~ 21195771 (+) True G75390
TU101656 lncRNA downstream 222974 21199287 ~ 21204023 (+) True G75405
XM_007244279.3 mRNA upstream 39880 20928290 ~ 20936087 (+) True ccdc77
XM_007244275.3 mRNA upstream 52291 20917506 ~ 20923676 (+) True LOC103034349
XM_022672312.1 mRNA upstream 52291 20917506 ~ 20923676 (+) False LOC103034349
XM_015604493.2 mRNA upstream 60067 20912781 ~ 20915900 (+) False ccdc34
XM_007244289.3 mRNA downstream 15445 20991758 ~ 20998066 (+) True LOC103038014
XM_007244405.3 mRNA downstream 41141 21017454 ~ 21021871 (+) True LOC103046250
XM_022672316.1 mRNA downstream 71583 21047896 ~ 21057840 (+) True thoc5
XM_007244297.3 mRNA downstream 71583 21047896 ~ 21057840 (+) False thoc5
XM_022672318.1 mRNA downstream 83119 21059432 ~ 21064841 (+) False chid1
TU101298 other upstream 768045 20203619 ~ 20207922 (+) True LOC103028745
TU101007 other upstream 1442894 19527991 ~ 19533073 (+) False LOC103044129
TU100801 other upstream 1890411 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 2520770 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 4687638 16286676 ~ 16288329 (+) True G74169
TU101630 other downstream 46943 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 112309 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 274154 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 1778839 22755152 ~ 22772561 (+) False LOC103028957
TU102309 other downstream 2511217 23487530 ~ 23487870 (+) True G75938

Expression Profile