RNA id: TU101612


Basic Information

Item Value
RNA id TU101612
length 2009
lncRNA type inter_gene
GC content 0.47
exon number 11
gene id G75366
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20979402 ~ 20985652 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttaattcattatgataaaaaaaaacatggctataTTGTGTTTTGCATTCCTATAAATATTAATGGCATTGTAATCAAGTATGAATGCACTATAAGATGACTTGATTGTGTTCATTGAGTCTTACAGGACATGCCATCCATTGCGAGTGTTAccaaaaattattttaacacacagcCACTTGGAAAATGACATAAGAAGGTAGGAAAACATCAGGACATATTAAAACTCTCCCACTACTTGTTTGGACATAGTATGAGCCCTAACCCACACCTCTACAAGTTAGATGGCAAAAGGAAAGTGACCCAGTATACGCACAGACACTAGTGCACAAACACAAGCCAGTGAAGTAGTTACAGTGGATTAGACACAGAATGTTAACTTACCACTGAACCAGAACTCAACTTGACATCAGTTTTTCCGGTCTGCTTAATGAAAGATTTCATGATGGAGCTGCGGCCAAGTGAGCCTGGAGTCATCATGAGCAGCTGGTTCTTTTGTACTGTTTGCAAAAAGCGCATGCTGTGTGTAatgccAGTCATGGCCTTCTTGGGAGGGGACTGCTTCTTCTTTGGTGTGCTGAGTGCTACTGCTGCAGACTCTGCTGCACGACGTTTAGAGCCAGAGCGAGAAGACCTTGGTTCATCCTGAGACTTTTTCCCACCGTCATCTGTTTCAGACAGCCGAGCCATAGACCGTGTGAAACGGCAATGTTCACCAGCAGGAGGTGTTTCTTGCTGCATTTCCACCTCAACCAGTGGTATCGCTTTGTCTAGTGAGCTCTTGGCCTTGACATCCTGTGGCGGAGGTGTCTGTGCTTCAGTTATGTTTTCAGCCACAAGTTCTGCTGGCTTTTCCACAGTAACAATTTGCTCAATTTTGTTCTCTATGTCATTCTCCTCCATTTCAACATCCATAGAAACATCacCACTGACTGAACTGCTGCATGTGGAGTTGCCCTGCCTGGCTTTCTTCTTCAGGAAGGACCGCCGAGAGGCACGTCGGACTGCTTCCTGTGTCATGCTGTGTCTAAGTCCCACAAGAGAGCGCCGCAGCACCAAAGAGTGTCGGACCGAGGTCCTTGACGGGGCCTGAGCTCCTGATGTGGCAATGGGCATTTTACTTGCACAGCGGCCTGGAGAGGGCCCAGACCCGATCAGTTTTTCGGCAGAAAGACGCTCAGCCGAGGGGATTTTCACCACTGCTTGAGACACTAATGTCTGCACCGGGGACGAAGAGCTGCTTGACTCCTTCACTTCCGACACATTTTTAGGGGCTTCAGGCGTCTGTGGAGCTTCATTCACTGTCTCAACCCCCTCGATATCCTCCTCCTTTGCCTTGGCAGCTCCCTTATTGCGAGTGCTACGTTTGACAGGCTCGCTCTCAGTCACTGCTACAGCAGCTTTATTACGCCGGGTACGGCGAACAGGCTCCTCAGACACAGAGACCTCAGGACTGCTGATGGGAGGATTTGTTATTACCACATTCTCAGAAATCAAATTAAGAGTAGTCTGGATCGAGGAACGACGCaggttgctgcgctttcctttaGAGAATCGTCTTTTGTTACGCGTGTCATTAAGCTCTGTGGAGATCCGTTTTCTGCGATTTGTTCTTTTCTGTGATGGAGTCTTGGGCATGAGCTCTGGTTCTGTAATGAAATTACTGGAGAACATGCGCTGAGCTTCCTGCTGAATCTCCTCCAACCACAACATGTGAACATTCTCAACCTCATTAGTAAAATCCTGCAGCTTCCCAGTCAACACCTGCGTGAGGGAACGCATAGCCTCGGGCAAAGTACTCATGGCTGCGCCCCCCAAAAAACCTGtttttttacGAAATTCGAGAGACCGCTCTATTTCTCCTTCGTCTTTCCCGTAGTCCCCGTTCTGAGAAACATTCAGGACCACTACAAAACACTCTGCTTTTTACCATTCGAGCTGCCCGCTCAAACGgtttaagtaatttaaaattCTCCGTGCACCAATCATTGCTACGCGCTACacgatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101597 lncRNA downstream 65316 20912831 ~ 20914086 (-) True G75357
TU101483 lncRNA downstream 184443 20794484 ~ 20794959 (-) True G75295
TU101478 lncRNA downstream 231323 20747698 ~ 20748079 (-) False LOC103032014
TU101461 lncRNA downstream 233691 20622641 ~ 20745711 (-) True LOC103032014
TU101464 lncRNA downstream 233691 20622641 ~ 20745711 (-) False LOC103032014
TU101613 lncRNA upstream 542 20986194 ~ 20986762 (-) True G75367
TU101673 lncRNA upstream 56455 21042107 ~ 21066403 (-) True G75419
TU101682 lncRNA upstream 75806 21061458 ~ 21063620 (-) True G75426
TU101678 lncRNA upstream 78696 21064348 ~ 21065147 (-) True G75424
TU101676 lncRNA upstream 79669 21065321 ~ 21071205 (-) False gatd1
XM_022671922.1 mRNA downstream 4653 20939918 ~ 20974749 (-) True LOC103036040
XM_007244278.3 mRNA downstream 51128 20923738 ~ 20928274 (-) False LOC103034889
XM_007244277.3 mRNA downstream 51128 20923738 ~ 20928274 (-) True LOC103034889
XM_007244273.3 mRNA downstream 68544 20908879 ~ 20910858 (-) True LOC103033709
XM_007244272.3 mRNA downstream 73882 20903078 ~ 20905520 (-) True LOC103033388
XM_007244290.3 mRNA upstream 18401 21004053 ~ 21007646 (-) True LOC103038341
XM_022672314.1 mRNA upstream 36314 21021966 ~ 21042030 (-) True morc2
XM_007244292.3 mRNA upstream 36314 21021966 ~ 21042029 (-) False morc2
XM_022672315.1 mRNA upstream 57829 21043481 ~ 21047306 (-) True LOC103039177
XM_007244300.2 mRNA upstream 79667 21065319 ~ 21071246 (-) True gatd1
trnat-agu_2 other downstream 83226 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 879152 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 947375 20027162 ~ 20032027 (-) True G75207
TU101215 other downstream 1113420 19859694 ~ 19865982 (-) True G75100
TU100809 other downstream 1906514 19070938 ~ 19072888 (-) True G74838
TU101746 other upstream 284477 21270129 ~ 21273017 (-) True LOC111193105
XR_002650263.1 other upstream 1470679 22456331 ~ 22513724 (-) False LOC103024007
XR_002650267.1 other upstream 3198917 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 3928646 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 3963392 24949044 ~ 24950022 (-) True LOC107197705

Expression Profile