RNA id: TU101613



Basic Information


Item Value
RNA id TU101613
length 482
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G75367
representative True

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20986194 ~ 20986762 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ACCATGTCATTTTTCTTCTCTTGTTGTGCCATTTTTtcttcaattttcttttttttctcttgctccttctccttctctacTTTGACACGGGCCTCTACTACTCTTTTTTACGCGCTCATCCCGTTTcCTTTTCATctcttcttgtttctttttaCGTTCCTCTTCAATCtttaattttctttcattttcttgttCAATTTTCTTGTTTAGAGCGTCCCATTTCTGTCGTTCCCGTTCCTGACAAAAGAGACGTTTTCAGTAGGCCTTTATATTTGTAGTCACAGCAGTTTTGGATTTAAGATATATGAAGGCAACATGGACAGCTTTAAGACTGTTTAGAGATGAGAAATGAAAACCTGTTTTAAAAGGATGACAAAAAGGTAACATCAATTTAAATTTTTGATCAAATTCTTCTGTCTTTGATTGTAAAGTAGCTGAGACATATCTATATTGATTACAGGAACCAGGAGTAACAGTTATGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101612 lncRNA downstream 542 20979402 ~ 20985652 (-) True G75366
TU101597 lncRNA downstream 72108 20912831 ~ 20914086 (-) True G75357
TU101483 lncRNA downstream 191235 20794484 ~ 20794959 (-) True G75295
TU101478 lncRNA downstream 238115 20747698 ~ 20748079 (-) False LOC103032014
TU101461 lncRNA downstream 240483 20622641 ~ 20745711 (-) True LOC103032014
TU101673 lncRNA upstream 55345 21042107 ~ 21066403 (-) True G75419
TU101682 lncRNA upstream 74696 21061458 ~ 21063620 (-) True G75426
TU101678 lncRNA upstream 77586 21064348 ~ 21065147 (-) True G75424
TU101676 lncRNA upstream 78559 21065321 ~ 21071205 (-) False gatd1
TU101705 lncRNA upstream 185860 21172622 ~ 21175068 (-) True G75444
XM_022671922.1 mRNA downstream 11445 20939918 ~ 20974749 (-) True LOC103036040
XM_007244278.3 mRNA downstream 57920 20923738 ~ 20928274 (-) False LOC103034889
XM_007244277.3 mRNA downstream 57920 20923738 ~ 20928274 (-) True LOC103034889
XM_007244273.3 mRNA downstream 75336 20908879 ~ 20910858 (-) True LOC103033709
XM_007244272.3 mRNA downstream 80674 20903078 ~ 20905520 (-) True LOC103033388
XM_007244290.3 mRNA upstream 17291 21004053 ~ 21007646 (-) True LOC103038341
XM_022672314.1 mRNA upstream 35204 21021966 ~ 21042030 (-) True morc2
XM_007244292.3 mRNA upstream 35204 21021966 ~ 21042029 (-) False morc2
XM_022672315.1 mRNA upstream 56719 21043481 ~ 21047306 (-) True LOC103039177
XM_007244300.2 mRNA upstream 78557 21065319 ~ 21071246 (-) True gatd1
trnat-agu_2 other downstream 90018 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 885944 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 954167 20027162 ~ 20032027 (-) True G75207
TU101215 other downstream 1120212 19859694 ~ 19865982 (-) True G75100
TU100809 other downstream 1913306 19070938 ~ 19072888 (-) True G74838
TU101746 other upstream 283367 21270129 ~ 21273017 (-) True LOC111193105
XR_002650263.1 other upstream 1469569 22456331 ~ 22513724 (-) False LOC103024007
XR_002650267.1 other upstream 3197807 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 3927536 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 3962282 24949044 ~ 24950022 (-) True LOC107197705

Expression Profile