RNA id: TU101637



Basic Information


Item Value
RNA id TU101637
length 1169
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G75390
representative True

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21190766 ~ 21195771 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


ggggtGGCACAATATTTAAGGGTGTATTGTAAACAATTTCCAAAAATATTggtgttattattgcatacgatacagCACACCGCTACTAACTACACAACTGACCAGTGAAACAGGTTCTTTCATCAGGATAAACTCACAGCGAGCCTATCTgctctcaccacacacacacagagtattGTGTGTAAGCAAGTGAGAACTATTGCAATGCTAAGTGCTTATTGATGTTGCATGAATCCACCCTCTGCTTTCTTCTCCCTCCGTCTCCTGCACTCTTGTTGGCTGTAGCAAGTTGCTGCACCAACCTCCAGACAACACTTTTCACATGACTAGATTTATAGCTGCATACAGGTCCAGACattaaacctgctagatgtGTGTTTGCAAGGCACTGGAGATTACTCAGCAAGCTCTTGgatcatgcttttttttgtagttcACAAAACAGCAGCTGAGTCAGCACCCATTTGCCCACAACCTAAGGCTTCTGTTGGTGATCTCCAGAAACAGTCAGCTAGTCTGATCAGGGCTAAAATCATGTAACAAACAGGCATATGCTTTCACTGTTGGGCTCTTAAGAAAGGAACCTTAAGTACTCTACACCTAGTACATGACTACAAAGCTCTGATAAAATTATACCAAAACAAACCTACTTTCAAAAGGAAGCCTGCATGGAAAAAGCAGAACTTTGCTTAGGATGCATATTTAATTCAAGcagttatttcttttttgtcatattatCATGAAGAGTTCATATAGAAAGCAACAGGTGACCAAATATGCCACAGCAATAGGTGACTGAAAATGGCACAGCAAACGAACCTCTGGAACGTAGTtgtctctcctttctctctcctcttcctgCAGTTTAATGGAGATGCCTCTGACTGGTCCCCTCTGGATACGCTTCATCAGATGAGTCACATACttttttttttttacccagcaATCTTGTTGCGGAGCTTCTTGCTGGGAATGATGGCGATCTCCTCACACACACGCTTGTTGGTGTGGAAGTCATTGCCCAGGCGAGTGTAGTACTTTTCAATGATGACCCGTGCGGCCTTTTTCACCGTCTTGGTCCTGACTCGTCCCTGttggcagaaaaataaatagacaaCAGTCAgaaatgcagaatatttaataaagaGTGGAAAAAAAGTACCTAGGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101654 lncRNA upstream 44314 21147808 ~ 21148349 (+) True G75403
TU101628 lncRNA upstream 145383 21046815 ~ 21047280 (+) True G75381
TU101557 lncRNA upstream 216350 20975967 ~ 20976313 (+) True G75342
TU101527 lncRNA upstream 245639 20945613 ~ 20947024 (+) True G75323
TU101507 lncRNA upstream 251613 20939351 ~ 20941050 (+) True G75310
TU101656 lncRNA downstream 3516 21199287 ~ 21204023 (+) True G75405
TU101664 lncRNA downstream 40821 21236592 ~ 21238466 (+) True G75413
TU101852 lncRNA downstream 555155 21750926 ~ 21751248 (+) True G75577
TU101913 lncRNA downstream 836388 22032159 ~ 22032470 (+) True G75627
TU101970 lncRNA downstream 1243259 22439030 ~ 22439325 (+) True G75664
XM_022672320.1 mRNA upstream 5227 21100409 ~ 21187436 (+) True srpk2
XM_022672318.1 mRNA upstream 127822 21059432 ~ 21064841 (+) False chid1
XM_022672323.1 mRNA downstream 54698 21250469 ~ 21264776 (+) False mov10l1
XM_007244315.3 mRNA downstream 74967 21270738 ~ 21273031 (+) True LOC103044722
XM_007244407.3 mRNA downstream 79171 21274942 ~ 21293323 (+) True LOC103046854
XM_022672324.1 mRNA downstream 83555 21279326 ~ 21293323 (+) False LOC103046854
XM_022672326.1 mRNA downstream 121761 21317532 ~ 21460874 (+) True LOC103047162
TU101641 other upstream 95757 21088622 ~ 21096906 (+) True G75391
TU101630 other upstream 167535 21023256 ~ 21025128 (+) True G75383
TU101298 other upstream 984741 20203619 ~ 20207922 (+) True LOC103028745
TU101007 other upstream 1659590 19527991 ~ 19533073 (+) False LOC103044129
TU100801 other upstream 2107107 19082816 ~ 19085556 (+) True G74832
XR_002650259.1 other downstream 54696 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 1559381 22755152 ~ 22772561 (+) False LOC103028957
TU102309 other downstream 2291759 23487530 ~ 23487870 (+) True G75938
TU102363 other downstream 2720020 23915791 ~ 23917603 (+) True G75974
TU102479 other downstream 2836329 24032100 ~ 24037861 (+) True LOC103038709

Expression Profile