RNA id: TU101746


Basic Information

Item Value
RNA id TU101746
length 1974
RNA type TUCP
GC content 0.50
exon number 3
gene id LOC111193105
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21269504 ~ 21273017 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATTTATTAGCTATGTTatattcacaaacacacaacagacacacataaatacagcaATATCTGAATAGAAAATACTATCTTTACAAATCATTTAACTCTactttactgattttttttactgtacaatTAACTCTATAGGCTCATTATTTACAGAGTGCATTCAGTCAGAATTCATGTGCTCAGAAAGCTGCGTAGGAGTCCCACTGGCGCCCCATAGGAGTGGGGGTCAGTCCGGAGCGGGGGGGGGCAGATCCAGCACGACCCTCAGCTACGACCCCCGCTTTaaccagcacacacacttacactcacataCAGTAaagttatatactgtacatacatgtGTGTGCGGTGCGGTGCGGGCCAGTGTTCGTTCAGCACTCCTGACCCCTGTGGTTTGTTAGTGGTCAGTTTTCCAGTATACACTGGGAGCGATGCTCAGTCTCCCGCCTCTCTCAGCACTTGTGCTGCTTCCACTTGCGCGCGGCCGTGGCGATGTGCGCGTCCTTCTTCAGCCAGGGGAAGAAGTGGGTGACGGTCATGGTGCCGTCAGCGCGAGCTCGGCCGGTCAGCAGGTAGAGCTGCGCGCGCCCAGGCCGCACCAGCTCGTGCGCGCAGCGGAGGTTGAGCAGCAGCCAGTGCTGCAGCAGCTGCGCGGCGCTGTAGGGCAGCAGAGGACCGCGCTCAATAAACTCCAGCTTCCCCTCCACCTCCAGCTCCGGCTCAGCAGAGGGCAGGCGCCGCCGGTACAGCTTAGCTTTAACCGCTgtgggacagagagagacaggcgtgtgtggaAGAGTGTGTGAGCAAAATAGGAGACTGACTGACCTTTAGGGAAGTTGCTGATGTGTTTGGGCAGTGGGGTCAGACACATGTCCTCCTGAGCAGGGAAGCGATCGCAGTCCAGAGCTTCAGGCCAGGAGTGGCCGTGACAGGCCAGAACAGGAGCACAGCTGTCCCTCACAACCACACACAGGCTTCGGCAGGGCTGGATGAACCTACACACAAGATAAAGACAGGAGCGACGAGGGAGCAGAGGAAGGCCTGGGCCTGAGGATGGCAGCCTGTCTGCAGCAAAGTGCGCCAGTTCTCTGAGTGAGGGATCACCTCGTCCTCCAGGCTGCTGTGGCCCAAGAGGTTGGGCAGTCTCATCTCAGAGTACCCCACGTCGTGGCACACACTCAGCTGGTGAGGTATAGGCACACAGCGAGTGGACTGGCCCAGGTCGAAGGCCTCAATCTGAGCAAAGAGGGTCAAAGCAAGCAGGGTGAAGATGAGAGCCATAGTTCCAGAGAAAGTGGTGGTCCTGTGAGAAGGGATCGTCCAAAGCTGTGAAGGTGAAGGTGCTGGAATggttgtgagtgagtgagatcCACTGGCTTATATACAGGTAGGGCAGAGCCAGCCAGGGCTGTTATCAACGACCTATCAAAGAGGTGCAGACGACGCGTCAAGCAGGGGATAACTACACGCAGACGCAGGGGGACTGAAAGGGAGGGGGGCATTAAATAAACAATCAAAGGCTCAGAATGCTCCAGCCCATTAAATGATGCACACCGTCTGCAGATGTCTGTACATTCACTTTAATGGTGTGTGTGGGCCTTGTTAAAATCAAAAAGCACACATCACTGTACTGAATACAACAGACATTCTTCAGACATAGTTCATTAAAGCAAAATGAGGAGTGCTGAGATTTGTACACGTATCACAGATCAGTTAAGACACAACACAGTGAATTATATAGCTTATTATGAGTAGACCaagagaaatgctccaaaaagttacctgatttttttttttacattgaatatTAACCAggtttttccttctcctgtaaagatgacattttggagatgacaattgtttttgtgtgacagcaacAATTATAATAGTACTATACAAAAACTAACTTCATAAAAATGTTACCTTCTCAGAATTTTAGCATAAATTTAaaggtaatttaaaatatatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101713 lncRNA downstream 24599 21245264 ~ 21245530 (-) True G75451
TU101709 lncRNA downstream 82384 21184875 ~ 21187745 (-) True G75447
TU101705 lncRNA downstream 95061 21172622 ~ 21175068 (-) True G75444
TU101676 lncRNA downstream 198924 21065321 ~ 21071205 (-) False gatd1
TU101673 lncRNA downstream 203726 21042107 ~ 21066403 (-) True G75419
TU101816 lncRNA upstream 293305 21566322 ~ 21575655 (-) True G75542
TU101824 lncRNA upstream 310348 21583365 ~ 21584651 (-) True G75550
TU101828 lncRNA upstream 353052 21626069 ~ 21626282 (-) True G75554
XR_002650261.1 lncRNA upstream 448628 21721645 ~ 21724907 (-) True LOC111193107
TU101861 lncRNA upstream 537523 21810540 ~ 21810761 (-) True G75584
XM_007244313.3 mRNA downstream 31935 21236632 ~ 21238194 (-) True pclaf
XM_007244312.3 mRNA downstream 35011 21199250 ~ 21235118 (-) False LOC103043194
XM_007244311.3 mRNA downstream 35011 21199250 ~ 21235118 (-) False LOC103043194
XM_007244310.3 mRNA downstream 35011 21199250 ~ 21235118 (-) False LOC103043194
XM_007244309.3 mRNA downstream 35011 21199250 ~ 21235118 (-) False LOC103043194
XM_007244316.3 mRNA upstream 20342 21293359 ~ 21299682 (-) True LOC103045028
XM_007244317.3 mRNA upstream 202728 21475745 ~ 21559492 (-) True tmem117
XM_007244321.3 mRNA upstream 305895 21578912 ~ 21591254 (-) True irak4
XM_015604495.2 mRNA upstream 639507 21912524 ~ 21946943 (-) True LOC103022647
XM_007244331.3 mRNA upstream 778221 22051238 ~ 22145393 (-) True pdzrn4
trnat-agu_2 other downstream 373953 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 1169879 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 1238102 20027162 ~ 20032027 (-) True G75207
TU101215 other downstream 1404147 19859694 ~ 19865982 (-) True G75100
TU100809 other downstream 2197241 19070938 ~ 19072888 (-) True G74838
XR_002650263.1 other upstream 1183314 22456331 ~ 22513724 (-) False LOC103024007
XR_002650267.1 other upstream 2911552 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 3641281 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 3676027 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 3911192 25184209 ~ 25184469 (-) True G76424

Expression Profile