RNA id: XR_002650260.1


Basic Information

Item Value
RNA id XR_002650260.1
length 1874
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC111193105
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21269504 ~ 21273017 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAATAttagttaatgttattttaaattaataaatatttattttattatctggtgtgtatgagtgtgtggaAGAGTGTGTGAGCAAAATAGGAGACTGACTGACCTTTAGGGAAGTTGCTGATGTGTTTGGGCAGTGGGGTCAGACACATGTCCTCCTGAGCAGGGAAGCGATCGCAGTCCAGAGCTTCAGGCCAGGAGTGGCCGTGACAGGCCAGAACAGGAGCACAGCTGTCCCTCACAACCACACACAGGCTTCGGCAGGGCTGGATGAACCTACACACAAGATAAAGACAGGAGCGACGAGGGAGCAGAGGAAGGCCTGGGCCTGAGGATGGCAGCCTGTCTGCAGCAAAGTGCGCCAGTTCTCTGAGTGAGGGATCACCTCGTCCTCCAGGCTGCTGTGGCCCAAGAGGTTGGGCAGTCTCATCTCAGAGTACCCCACGTCGTGGCACACACTCAGCTGGTGAGGTATAGGCACACAGCGAGTGGACTGGCCCAGGTCGAAGGCCTCAATCTGAGCAAAGAGGGTCAAAGCAAGCAGGGTGAAGATGAGAGCCATAGTTCCAGAGAAAGTGGTGGTCCTGTGAGAAGGGATCGTCCAAAGCTGTGAAGGTGAAGGTGCTGGAATggttgtgagtgagtgagatcCACTGGCTTATATACAGGTAGGGCAGAGCCAGCCAGGGCTGTTATCAACGACCTATCAAAGAGGTGCAGACGACGCGTCAAGCAGGGGATAACTACACGCAGACGCAGGGGGACTGAAAGGGAGGGGGGCATTAAATAAACAATCAAAGGCTCAGAATGCTCCAGCCCATTAAATGATGCACACCGTCTGCAGATGTCTGTACATTCACTTTAATGGTGTGTGTGGGCCTTGTTAAAATCAAAAAGCACACATCACTGTACTGAATACAACAGACATTCTTCAGACATAGTTCATTAAAGCAAAATGAGGAGTGCTGAGATTTGTACACGTATCACAGATCAGTTAAGACACAACACAGTGAATTATATAGCTTATTATGAGTAGACCaagagaaatgctccaaaaagttacctgatttttttttttacattgaatatTAACCAggtttttccttctcctgtaaagatgacattttggagatgacaattgtttttgtgtgacagcaacAATTATAATAGTACTATACAAAAACTAACTTCATAAAAATGTTACCTTCTCAGAATTTTAGCATAAATTTAaaggtaatttaaaatatattttggacCGTTTGCTTTGGCATTTATGATGAAATTTATCAacaatttgtaatatttgtaattgtaataaaatacaaGATTTTGGTCCGGCTGCaataatattaatgattaaGTTGGGgattacaatgttttttgggGATGAATCTGAAATGAAGACACTAATTAAaccttacatttttattacgTTTTTTTGCTGCTGGTCATGTATACAGTTCTTATTTTCACCAGAGGCAGATTACATTTGCcatatatcatttattttactccagaCTTTGCTATACAAATATTATTGATTATATAACATGACTTTGGGAGAACTGTGATCAAAcgttctttatattttattctttatttattttatttatagatattatggaaaaataaaaataaataaaaatgttagtttttttccaatatcatgcagccctagaaCACATAATGGTAACCAtgtaaaaacacagacatttgaCTAGTAAACAACTCATAATGAGTCTGTTTTAAATGACCAGAGTAAACTAGAATGTTCCCCTACTCttgttaattattataaattattttttgactTTGTACAGCACTGTGCCATGCAATGTTTTATTAGCTAGGTCTCCTCCAGTATCTCAGGTGTAAAA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0048263 determination of dorsal identity biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0007420 brain development biological_process
GO:0050821 protein stabilization biological_process
GO:0001944 vasculature development biological_process
GO:0009790 embryo development biological_process
GO:0042995 cell projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101713 lncRNA downstream 23974 21245264 ~ 21245530 (-) True G75451
TU101709 lncRNA downstream 81759 21184875 ~ 21187745 (-) True G75447
TU101705 lncRNA downstream 94436 21172622 ~ 21175068 (-) True G75444
TU101676 lncRNA downstream 198299 21065321 ~ 21071205 (-) False gatd1
TU101678 lncRNA downstream 204357 21064348 ~ 21065147 (-) True G75424
TU101816 lncRNA upstream 294760 21566322 ~ 21575655 (-) True G75542
TU101824 lncRNA upstream 311803 21583365 ~ 21584651 (-) True G75550
TU101828 lncRNA upstream 354507 21626069 ~ 21626282 (-) True G75554
XR_002650261.1 lncRNA upstream 450083 21721645 ~ 21724907 (-) True LOC111193107
TU101861 lncRNA upstream 538978 21810540 ~ 21810761 (-) True G75584
XM_007244313.3 mRNA downstream 31310 21236632 ~ 21238194 (-) True pclaf
XM_007244311.3 mRNA downstream 34386 21199250 ~ 21235118 (-) False LOC103043194
XM_007244316.3 mRNA upstream 21797 21293359 ~ 21299682 (-) True LOC103045028
XM_007244317.3 mRNA upstream 204183 21475745 ~ 21559492 (-) True tmem117
XM_007244321.3 mRNA upstream 307350 21578912 ~ 21591254 (-) True irak4
XM_015604495.2 mRNA upstream 640962 21912524 ~ 21946943 (-) True LOC103022647
XM_007244331.3 mRNA upstream 779676 22051238 ~ 22145393 (-) True pdzrn4
trnat-agu_2 other downstream 373328 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 1169254 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 1237477 20027162 ~ 20032027 (-) True G75207
TU101215 other downstream 1403522 19859694 ~ 19865982 (-) True G75100
TU100809 other downstream 2196616 19070938 ~ 19072888 (-) True G74838
XR_002650263.1 other upstream 1184769 22456331 ~ 22513724 (-) False LOC103024007
XR_002650267.1 other upstream 2913007 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 3642736 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 3677482 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 3912647 25184209 ~ 25184469 (-) True G76424

Expression Profile