RNA id: TU102012


Basic Information

Item Value
RNA id TU102012
length 640
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G75689
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 22630194 ~ 22633409 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCaatgaaattgtatttattatttctttttttaatttactgacACGTTATGTTGGTGGCACTACACGTGTGATCCAGCAGGGGGGGCTGCTTGCCTTATCAAAGCCAGACTGGAGCATTTATTTTGTTCTAATGTCAGTTCAATCAGATGTTCAATGCTTTCTTAATACATCTTGAAAGACGTGATGCTGATGTCTCCCTTGACACGAATATAACTGATGGTCTCCATCCCCTGTCGGTTGGGGAACTCAATCTCCTGCCCATCAGGTAGCTTCACCTCAAACAGTCTTCCAGTGTGCTTCAGTACAACTTTAAACGTAGAGCCTGGGTGAAAAGGATTGTGGGTGTCTCTTTGCTCCTGGTCCCAGATATTATCACTCCGTGAATTACACACCAGCACTGGAGTTTCACTATCGTCTTCGTAAAAACGGGGGTTGAAGTGAAGCGCCAGTTCACTTGAACTAGATCCCAGATCAATCTGAAACCTTTTGGCATCGGCATTGATCTTCCCTTGGACTTTCAGCTGATCTCCTGCCCTGAGCAGAACATTCTTCATTTCAGCCTCCATTTCTTGATCCTCTGAGGGCTTTGCGAGTGAGCAGAACCTCTTCCACACATCCACAGTAATCCTAATCATTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101970 lncRNA upstream 190869 22439030 ~ 22439325 (+) True G75664
TU101913 lncRNA upstream 597724 22032159 ~ 22032470 (+) True G75627
TU101852 lncRNA upstream 878946 21750926 ~ 21751248 (+) True G75577
TU101664 lncRNA upstream 1391728 21236592 ~ 21238466 (+) True G75413
TU101656 lncRNA upstream 1426171 21199287 ~ 21204023 (+) True G75405
TU102065 lncRNA downstream 118126 22751535 ~ 22751999 (+) True G75734
TU102068 lncRNA downstream 148326 22781735 ~ 22815522 (+) False LOC103047784
TU102092 lncRNA downstream 267869 22901278 ~ 22902077 (+) True G75760
TU102147 lncRNA downstream 317271 22950680 ~ 22950899 (+) True G75795
TU102164 lncRNA downstream 391866 23025275 ~ 23081671 (+) True G75807
XM_007244328.3 mRNA upstream 658958 21956572 ~ 21971236 (+) True LOC103021604
XM_022672332.1 mRNA upstream 658958 21956576 ~ 21971236 (+) False LOC103021604
XM_022672331.1 mRNA upstream 675055 21948555 ~ 21955139 (+) True LOC103022337
XM_022672329.1 mRNA upstream 717899 21865975 ~ 21912295 (+) True LOC103047463
XM_007244347.3 mRNA downstream 3751 22637160 ~ 22666809 (+) True LOC103027184
XM_007244353.3 mRNA downstream 121564 22754973 ~ 22780959 (+) True LOC103028957
XM_015604558.2 mRNA downstream 158873 22792282 ~ 22815522 (+) True LOC103047784
XM_007244409.3 mRNA downstream 158873 22792282 ~ 22815522 (+) False LOC103047784
XM_007244354.3 mRNA downstream 187708 22821117 ~ 22824416 (+) True rsl24d1
XR_002650259.1 other upstream 1365418 21250467 ~ 21264776 (+) True mov10l1
TU101641 other upstream 1533288 21088622 ~ 21096906 (+) True G75391
TU101630 other upstream 1605066 21023256 ~ 21025128 (+) True G75383
TU101298 other upstream 2422272 20203619 ~ 20207922 (+) True LOC103028745
TU101007 other upstream 3097121 19527991 ~ 19533073 (+) False LOC103044129
TU102047 other downstream 121743 22755152 ~ 22772561 (+) False LOC103028957
TU102309 other downstream 854121 23487530 ~ 23487870 (+) True G75938
TU102363 other downstream 1282382 23915791 ~ 23917603 (+) True G75974
TU102479 other downstream 1398691 24032100 ~ 24037861 (+) True LOC103038709
TU102670 other downstream 1625100 24258509 ~ 24260506 (+) True G76192

Expression Profile