RNA id: TU102164


Basic Information

Item Value
RNA id TU102164
length 2786
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G75807
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23025275 ~ 23081671 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcCTAAATGTACAAAGGCAAGTTacaatattgtataaaaaaaaaagaaatgtggcAATGTACACTTTACATACGACAACCCCaggaagagagtgagggagagagaggcagaggaaGAACAATACAGAGCTCAGAGACGAGGGGGGGAGAGGGAGAGCCAGGTTTACGAGAGAAATGCATCCAAACATAGAAATGAACAAAAGCTGTAAACATCTGTCTTTCAAGTACCAATGAGTGATAGTGAGCCACAGCTCTCAGACTGAGAGGGACAGGACAAAAACACTCAATGTGAGAACGGGAGAGGCCCAAATAGATCAGGAAGTAGAACCTGGGGGGCTGCGGGGGGTACGGGGGGCGGGGGGGTTGGTAAGCACATTGCGTCCTCCCTTCAAGGACTGCATGGGGACCAGCCAGAGTAGCACCGTTTGAGACTAACAATAATGTCTGTAGTtatagaacaaaaaacaaaacaaaaagagtgACTGTGTCTCACTGAGGATAAACActgaaaatgcttaaaaaaaagaaaattagaaacTTAGAACAAGCGCTTTTTTTAAAACTCCTCAATACAGAGGAAACCATGAACCATGTCACCAGACAGCACAACATTACTGATCATATGTTTAAAGAGAAAACAGTTAAGtgatattaattattactactatttattttaaatatctgtCGCCATATTTTATCCAAGATGATTTAATGTTAAATCATCTCCTCATCCACTGGGTTTGATAGAACATTTTacaatgacatgccaaaagtcgtGGGACAGCAGAATGtgaaattgatcatgaagtgctAACTGAGGGCACTTCATGATCAATAACTCAACTTTGGAAGGCCGGAGGAGTTTGAGCAAGGTCTAGTAGTGAATGCCAGATAGATGGaacataaagtttttttaatttagtgcgGGCGTTGATTCCTGGTTACCACCGACAGTTGACAGAACAGTGGATGGTAATAATATTGTGACTGGAGGTGTCGGGCAAGAGCGCTCCGAAGTCAATCCCATTTCCATGATTCCTGTTGTTCTATCAGAGCAACTACCAATGACCTCGATTTATCGATTTATGTTAGTGAAGATCTGGACAATTATGTTATGATTTGATTCATGTTTTCCGTGAAACCGAAGTGTGACATGCTTGGAAAAGAAGTTGTGGGTTTGAGGTTTGAGGGGGAGAAAAGACACCCAAGTAAAGAGAAAAGTGGAGCAAGAGAAGAAGGGGAGGCAGGGAGAGGGGGGGAAATATATCACAACACTTCAATTATAAAGCCGTTACACCAGCTACATATTCATATTATATCAACAATAGTAGAAAAAAAAGGCTAACAgacaaaaaaaggggaaaaaaagagtaggAAATTCCAATAGCATCCAacaacctttttaaaataattcctCTGTACAATATATACAGAAACCACATAGTGAGTGCATGTGGGAGCGAGAGAAGGGCAGCAAAAGAGGAAGTGAGGCAAACGTGCACAGCTTGCCTGACTCTCCGTGTtaatgtttctttcttttttttttttctttttctttctagtGCTATAGTACACCATGCAGATACACATGACAGAGTGGAAGGGAGAGGGAGCCGGGAGGACATCCGGAGATAGGAGGTCCAAAAGTGAACACCGAACAGCACATGTACTCCACTGTCAGGTATACAGTAACTCTACACATCAATGTATTCAGACTGGGATCCGACTACCGTGGTGGGCCACTCTTGGGCCTATGCAAGGGGGGGCACAAAAAAAGTCCCGTCGAGATCTTCTAACCATAGAAACTCTCTTCGTGCTTTTGTATATGCACTTACCCAACGGCTTAAACTCTGATCCATGCAGTTTGGCATGAGACTCTtaatcatcagcagcagcagcagcatgttgAAGAAAAATAGCATGGGCAtgtacgtgtgtatgtgtgtacatttgtgagtgtgtgtgtcacagTTTGTGACCAGGCAACCTCGgacacatacatgcacacactcatacatacatacatacatacatacatatacccCACCTCACACAGACAGGATGACTGTCTCCCTGACTGTCACAGTTACAGAAGCTGAGGCCTGGGAACAGCTCCTCCTGGAGTACACACACCCTTTCAGGCGTTCAGCTTCCCAGCAACGGCTGCTTAGTGGTGTTGGTAGTACTGCCACAAAAAAAggcactactactactactccagTCCAGCCTACAAGcagtacatacatacacacacgtcacacactccacacatcCCTGTCGTCCTTCCTTAGAGAAGTCCTTAGAGAAGTCCTTTGCAGCATGTTTGAGCACCCTTCCAAAGCAGCCTATCATTAGTAGTCCCATTGAAGATCCAAACTACAGGTGCAGGAGAAATGTGTGGAACCCCTCAGTAACGACCACTTGACCGTTACGCTGCTACTTGTGTACGCCAGCCAGTGCAACGTTCCATACGCATGAGCTATGAGCTGTTGATGGAATCACAACAACGAGAGACACAATGAGGTTTGCTCTAGTCTccttcaaagaaaacaaaacaaaaaaaatacaagaaaggCATCCTACCAACATCAGGATGTACGATTACAGGCCGATTGCAGGAAGTTGGAAGTGTGTTTCGAATGCCTTCAACAAAGCATATATTTACTATGAGCTCAAGTAAGTGGatgtaaaatgaactgaaatcgTAACAGGAACTCTAGCTGCTCCCCTGAATCTGAACTaactgagtgagagagagagagtcagagagagaaaaagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102147 lncRNA upstream 74376 22950680 ~ 22950899 (+) True G75795
TU102092 lncRNA upstream 123198 22901278 ~ 22902077 (+) True G75760
TU102068 lncRNA upstream 209753 22781735 ~ 22815522 (+) False LOC103047784
TU102065 lncRNA upstream 273276 22751535 ~ 22751999 (+) True G75734
TU102012 lncRNA upstream 391866 22630194 ~ 22633409 (+) True G75689
TU102235 lncRNA downstream 132732 23214403 ~ 23214749 (+) True G75874
TU102245 lncRNA downstream 184259 23265930 ~ 23266319 (+) True G75881
TU102246 lncRNA downstream 192899 23274570 ~ 23275013 (+) True G75882
TU102253 lncRNA downstream 211165 23292836 ~ 23293142 (+) True G75889
TU102336 lncRNA downstream 700361 23782032 ~ 23782993 (+) True G75957
XM_007244354.3 mRNA upstream 200859 22821117 ~ 22824416 (+) True rsl24d1
XM_015604558.2 mRNA upstream 209753 22792282 ~ 22815522 (+) True LOC103047784
XM_007244409.3 mRNA upstream 209753 22792282 ~ 22815522 (+) False LOC103047784
XM_007244353.3 mRNA upstream 244316 22754973 ~ 22780959 (+) True LOC103028957
XM_007244347.3 mRNA upstream 358466 22637160 ~ 22666809 (+) True LOC103027184
XM_007231193.3 mRNA downstream 336995 23418666 ~ 23425305 (+) True fam96a
XM_007235179.3 mRNA downstream 597546 23679217 ~ 23687396 (+) True saal1
XM_007235176.3 mRNA downstream 622254 23703925 ~ 23710875 (+) True tph1
XM_007235178.3 mRNA downstream 622254 23703925 ~ 23710875 (+) False tph1
XM_007235177.3 mRNA downstream 623469 23705140 ~ 23710875 (+) False tph1
TU102047 other upstream 252714 22755152 ~ 22772561 (+) False LOC103028957
XR_002650259.1 other upstream 1760499 21250467 ~ 21264776 (+) True mov10l1
TU101641 other upstream 1928369 21088622 ~ 21096906 (+) True G75391
TU101630 other upstream 2000147 21023256 ~ 21025128 (+) True G75383
TU101298 other upstream 2817353 20203619 ~ 20207922 (+) True LOC103028745
TU102309 other downstream 405859 23487530 ~ 23487870 (+) True G75938
TU102363 other downstream 834120 23915791 ~ 23917603 (+) True G75974
TU102479 other downstream 950429 24032100 ~ 24037861 (+) True LOC103038709
TU102670 other downstream 1176838 24258509 ~ 24260506 (+) True G76192
TU102912 other downstream 1791729 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile