RNA id: TU102449


Basic Information

Item Value
RNA id TU102449
length 1467
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G76042
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23900642 ~ 23910505 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCATTTTATTAAATCTCTTTTAACCATCATCATAACACTGGATCTTTGGTGTCCCACAGCACTTCATTAAACAAACACCTAACCCCTAGATTAGCTAATAAAAGAACGAACTTCACGCTTCTTTACTCGATAAAAGATTCTCCTCTCACCTCAAGAGGACAAGGGgactttaagtattttttattttttttgtttgtttttttgccaccATTATCATGCCTTGGACTTCTTGAGCACTGACCCAGCAGTGAGACATTAAAACTGGCAGAGAATCAGTAATGTATATCTGTCACTTTACATTGTGTTTTACATTGCTGGCATCTTCTTTAATTTCATATGCTTCAGTTGACCAGTATGTACATGAGATTCTGAAGAGAgcctaaaacactaaaacaaacccTAAAGAGAGCAACACACACAcgacatcatcatcattatcattatagtTATCTCAAACTCTGTGTACTGCATGGTCTGAAACAGGCAAATTATTatagagtgaaagaaagaaacccTTATGAGTTGATATATTTATGACTAGGTTGAACAGAATAAAAGAGAACAGAGGATACAGTCACACAACACAGAGAGGGAATGCTACAGTTTGCTTGATGACAATTTTCCATCCCTGCGTCCTTGCCGCTCCATATTGCTCTATTCAGTTCTCAGATCAGTAACAGTGTTCAGGGAAACGAAAAGATACACTGGAAAATCCACTCAGACTCCTTTCTTCGACGACTGTACCACGCTAACCTtgtaaagtgaaaaataaataaacaaacagacagacaaacaaacaaacaacaaacagcaCCAACAAGAGTTTAGTTCtactaacattttaaacaatagcAATCAAAACCACTCAAAGCTTAAAAGGCATATAGGCTTGACAGTCAAGTCACAATGATTTTCTCTAGAACTCACTTACTGCTTACTCGCTCGCTCACTTActactcgctcactcactcactcaatcaatcaattattcACTCACTTGCTTACTCTGTTCCATATGAAAATGTGGTGCATAAAATTCAACACTGACCAAATTTCCCATAATCAAGGCATTGAACAGATAGTGGGAAGGTGAGGGTACTTAGCTATTTCTATCTTTTTTCTATCTTTATGGTGGCAAAAACAGGGATAAATACTAGTCAGCTAAAAGGGAGGAATTGGGGGCAGCGAGAGACTACTGAAGGGCACACTGTCTCATGGTTTTTTCAAATTTACtcaaactttatatatatatatataaaaaaaaaaaacaaaaaaaaaaaaaaaaaacacagggtcTCAACAATGCACTCACTCTGATGGAGGTCTCTCCCCCATGGGGTTGCTGTAAACGGAACACTTGTGCCACCATGTGGTCGGTGGTAGGATGGAGAAGGATTCGGCGAGAGGCCAATCCCACCATTACATAGCAGCCCATTGGAGACAGGCTTACAGAGATGGCATTGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102445 lncRNA downstream 4431 23895354 ~ 23896211 (-) True G76040
TU102439 lncRNA downstream 14470 23881814 ~ 23886172 (-) True G76035
TU102416 lncRNA downstream 40214 23801545 ~ 23860428 (-) True G76015
TU102501 lncRNA upstream 76244 23986749 ~ 23987527 (-) True G76069
XR_002650268.1 lncRNA upstream 84905 23995410 ~ 23999176 (-) True LOC111193113
TU102504 lncRNA upstream 99465 24009970 ~ 24016230 (-) True LOC103037768
XR_453278.3 lncRNA upstream 103301 24013806 ~ 24015454 (-) False LOC103037768
TU102528 lncRNA upstream 112624 24023129 ~ 24029595 (-) True G76086
XM_007235170.3 mRNA downstream 67574 23827214 ~ 23833068 (-) True LOC103042310
XM_007235172.2 mRNA downstream 127973 23747948 ~ 23772669 (-) False kcnc1
XM_007235171.2 mRNA downstream 127973 23749684 ~ 23772669 (-) True kcnc1
XM_007231194.3 mRNA downstream 482497 23370623 ~ 23418145 (-) True spg11
XM_007231195.3 mRNA downstream 534426 23324577 ~ 23366216 (-) True LOC103033738
XM_007235162.3 mRNA upstream 5286 23915791 ~ 23922222 (-) True LOC103039841
XM_022672376.1 mRNA upstream 14763 23925268 ~ 23974335 (-) False LOC103036104
XM_022672375.1 mRNA upstream 14763 23925268 ~ 23974285 (-) False LOC103036104
XM_007235150.3 mRNA upstream 14763 23925268 ~ 23965069 (-) False LOC103036104
XM_007235149.3 mRNA upstream 14763 23925268 ~ 23948419 (-) True LOC103036104
XR_002650263.1 other downstream 1386918 22456331 ~ 22513724 (-) False LOC103024007
TU101746 other downstream 2627625 21270129 ~ 21273017 (-) True LOC111193105
trnat-agu_2 other downstream 3004466 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 3800392 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 3868615 20027162 ~ 20032027 (-) True G75207
XR_002650267.1 other upstream 274064 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 1003793 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 1038539 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 1273704 25184209 ~ 25184469 (-) True G76424
XR_002650273.1 other upstream 1378345 25288850 ~ 25301768 (-) False rab3il1

Expression Profile