RNA id: TU102713


Basic Information

Item Value
RNA id TU102713
length 2646
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC111193114
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24566804 ~ 24710951 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAGGCGGAAGGGAAATGTAAACAAGAAACGAAAATCATCATGCGCTGCAGAAAATACACCTAGTGAAGAATTAGTTACTCAGATAAgcagttttacagtaaactggtgaattacatttttttaaggtaatttaaataaaatattttctatatttttattaggctACTTTGAAAATTAACAATAGCTAAGTGTTTTAAAAGGCATTAGCCAAGCTATATTAATGCATTGCTACATCATCCCTTACCATTTAATATTGGAGTCCCAGTGTCAAAATAGGTGGATGAGATGATACAAAATCCTTATCGATAGGGATTTTCAGTTACATTGttactttctatttatttagaattaaataacaaataattccTGTGGGAGagcatataaatacatttttattggtgAGAAAGCTGATGAAAAATAGCAAGAAATACTTGACCCCCCCCCCAATTATCATTGTATAATTTtcaccctgtgtgtgtgtgtgagagagagagtgtgaaagctGGCTAAAcactgcctctgtgtgtgtgatagcTGGTTAAACACTGCCTGTAATGTTCTGAACTGCCCAGATTGATCTCCACTGCGCACTATTACTGCCAGGATCTCTGCTGAAGAGATtctaaacacagagagagagacagagagagagagaaagagagagagagagagagagagagagagagagagagagagggagacagagagagagagagagagtaaaagagagagagagagagagagagagagagagagaggttttcTATTCTCAAACATGCTGAATGTTACGCCtgttgtatatatgtgtgtatatgaatatatttatatatgtgtgtgtttggagaaGGTTGTTGTGACAGGTAGGGCCTGAGGTGTCACACTGCATTATTCTCTCGTTAGAGCTGCTCCCTATGTGTGACCTCAGGGTCAACAGCGGGGTAGAGATCAGAGCTAAacatagcacacacacatattcacacacacacacacacaaaacaaaaactacaGTGTTAAGAACATGCATTGTCAGAATACCAATTTTAGGAAAGTAAGAATGGTAAGAATCAGGAAAGAAAGAGTGGGaatgaaaaatgtgtaatagaaaaaaaagaaaatgtgggGATGTTGAGAATTAAGAGGAGATGAAGAGTGGAGCAATGAAAAAGTGATAAAAtgagatagagacagaaagGTAAAAGAAAGGGAATAGTGAAAAAGAAATAAGCTACCTTTAGAAAGAAGATTGAGGTAGAATTTAATAGTgaaaatttcagaaaaaatgaAAGACAGACACAAAAGAAGGAAGTGAGAAATGCGAGACAAAGATGAGAAAAGAGTAAGAGGACAGAAGACTGAAAAAAAACCCCCAGAAAAGTAAGAAATGAAGGTGCATGAGAAATagataagaaataagaaaagtgTGAAAGGTGAGACAAGGAACAGACAATTAAGAGTCAGATGTGAGGAtgtgagagaggaagaagaagaggctaaaagctaaagtgaGAAAGAAGATCATGAGAAAAAAATAGGTGAGGAAGAAAACGTgagaagagagagcgagacggTGATAACGAGACAAAAatcaagcgagagagagagagagagagaggtttacttgcagtgtgtgtgtgtgtgtgtgtgtttgcaggagGTTGCATCATGCAGCAGGTTGCTGTAGTCGCTCCAGTAGAGTAGGTAGGGCTTATCTTAGCAGCTGTCAGCTGAAATTTACCATCAAACAGAGGCATGACGAGAGCAGAGCACAGAGCAGCAGAGCCATGAGAACCTGACAGCTCTCCTTACACTGAGCCCACATGTTTATtcatagtctctctctctctctttcttctctctctctcttctctctctctctcagtccagTCCTGCATTAAATCCAGCATCAAATAAGTGGAAGTTTATTAGCAGTAAAGGTCAGGCCGGTTAGTGGTGGGATTTGCTGAATATTGTGTGAATCGGTGAATCGGCCTGTTTGTGGTGGTCTTACCCCTCAGGCCCCCCACACACTCCGACCGGCATCAGATACAGACCCTGCTTCATATTTTTCTCAATCTGCAGCTTATAGAGCTTATCGCTGCTTCACTCCCGCTGGACAGGGCtcgtctctgtgctctgtctctctggGGATCGGCTCTGTAATCCACTGTCTCTTGGCTGCCAAAGGGAGAGAGGGGCTAATAGAGTGCAGTTTAACCCCGTTGTGGGAGCGAGGGAGggacagtaagagagagtgtgaaagagagagagagagagaaagagagagagagagtgtgtgtgtgagtgtagctGGTGGTTTGGTCAGTCAGCAAGAGTGAGTGTGCTCCATCCGGTGACAGGAGAACTGAGGAGCTCTTGGGAGATGCTATCagcctcaatctctctctcacttacttcTCTATctcgctctttttctctctctctctctctctttctctctctctctctcctcccctaGCAAccggaaaagagagagacaccgAGGATCAcatgaggtagagagagagagagagagagagagagagggagtaaaattataaaaaaatatttaaatttgagtTTAACTACATATGCGAAATACTTTAAtatacttttgttttattttttatttcatagcaatttttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102738 lncRNA upstream 19187 24527631 ~ 24563160 (+) True G76225
TU102727 lncRNA upstream 119788 24441085 ~ 24462559 (+) True G76217
TU102729 lncRNA upstream 125656 24454211 ~ 24456691 (+) True G76219
TU102682 lncRNA upstream 290621 24289392 ~ 24291726 (+) True G76202
TU102676 lncRNA upstream 301557 24279494 ~ 24280790 (+) True G76197
TU102914 lncRNA downstream 210184 24921135 ~ 24922440 (+) True G76349
TU102942 lncRNA downstream 271014 24981965 ~ 24983407 (+) False LOC103022391
TU102943 lncRNA downstream 273201 24984152 ~ 24984391 (+) True G76367
TU102947 lncRNA downstream 277503 24988454 ~ 24991599 (+) False LOC103022708
TU103124 lncRNA downstream 568064 25279015 ~ 25279623 (+) False LOC103026466
XM_007235123.3 mRNA upstream 180622 24361414 ~ 24401725 (+) False LOC103029007
XM_022672399.1 mRNA upstream 180622 24381932 ~ 24401725 (+) True LOC103029007
XM_015601840.2 mRNA upstream 180622 24384516 ~ 24401725 (+) False LOC103029007
XM_007235125.3 mRNA upstream 223172 24342743 ~ 24359175 (+) True LOC103029535
XM_007235137.3 mRNA upstream 356633 24211986 ~ 24225714 (+) True drd4
XM_007235121.3 mRNA downstream 14193 24725144 ~ 24740083 (+) True fads2
XM_022672386.1 mRNA downstream 91051 24802002 ~ 24860926 (+) True myrf
XM_022672387.1 mRNA downstream 93482 24804433 ~ 24860926 (+) False myrf
XM_022672385.1 mRNA downstream 93484 24804435 ~ 24860926 (+) False myrf
XM_022672388.1 mRNA downstream 93485 24804436 ~ 24860926 (+) False myrf
TU102670 other upstream 321841 24258509 ~ 24260506 (+) True G76192
TU102479 other upstream 544486 24032100 ~ 24037861 (+) True LOC103038709
TU102363 other upstream 664744 23915791 ~ 23917603 (+) True G75974
TU102309 other upstream 1094477 23487530 ~ 23487870 (+) True G75938
TU102047 other upstream 1809786 22755152 ~ 22772561 (+) False LOC103028957
TU102912 other downstream 162449 24873400 ~ 24880941 (+) True LOC111193110
TU102913 other downstream 162449 24873400 ~ 24879892 (+) False LOC111193110
TU102930 other downstream 235837 24946788 ~ 24948149 (+) True G76358
TU103035 other downstream 473134 25184085 ~ 25184732 (+) True G76423
TU103131 other downstream 583550 25294501 ~ 25296468 (+) True G76464

Expression Profile