RNA id: TU102723


Basic Information

Item Value
RNA id TU102723
length 4892
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC111193114
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24566804 ~ 24710951 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttctctttctctctctctctctctctctctctctctctcagtccagTCCTGCATTAAATCCAGCATCAAATAAGTGGAAGTTTATTAGCAGTAAAGGTCAGGCCGGTTAGTGGTGGGATTTGCTGAATATTGTGTGAATCGGTGAATCGGCCTGTTTGTGGTGGTCTTACCCCTCAGGCCCCCCACACACTCCGACCGGCATCAGATACAGACCCTGCTTCATATTTTTCTCAATCTGCAGCTTATAGAGCTTATCGCTGCTTCACTCCCGCTGGACAGGGCtcgtctctgtgctctgtctctctggGGATCGGCTCTGTAATCCACTGTCTCTTGGCTGCCAAAGGGAGAGAGGGGCTAATAGAGTGCAGTTTAACCCCGTTGTGGGAGCGAGGGAGggacagtaagagagagtgtgaaagagagagagagagagaaagagagagagagagtgtgtgtgtgagtgtagctGGTGGTTTGGTCAGTCAGCAAGAGTGAGTGTGCTCCATCCGGTGACAGGAGAACTGAGGAGCTCTTGGGAGATGCTATCagcctcaatctctctctcacttacttcTCTATctcgctctttttctctctctctttctctgcctgtCTCCAAGCTCAGTGTGTGTCGTTCAGGTCCCAGCCTCCGTCTGCTCTCctctttaattgttttaatgcgCTGCCCCCCCCTCGGGGCCTGCGGGACCACTCCCAGTCAGGGTTCCTGTGCACATTACTCTGAATGAACATAAATAACtacaataacagtaataatacccattcttttttttctgtttacatttgactgtttgtctgtgtgtaacCGTACGTGTGTGATACAGTAGATGTTCTTCCGTTGAGTTTCTTGTTTCTCGTTTCTTTAAGAAATACTCGGAAAAATACGGGGGGCTAAAAAGACCCCGGATATGTTTTAAAGCTCTCTTTTTCCTGTAAATAATTGTTGCGAAACAAATGAGATggttgaaaaatatgattttccaCTTGTAACCATGAAGAAAAAATGACAACTGGTGGTGTAGAAGATGAAAATCATGATgacaataatgatgatgatgataattatGATGCTGATAATGTGCCCTTCTTGAATAAGGGTGTTTGATGTCCACTGTATTTTCATTGGAGGAGAGGTTGGGGGAACAGGGGAGTAGTAGAGAGGGACACAAgtgagaaagcgagagaaagaaggagaaagagagaaagatagaaagaaagaaagaaagaaaaagagagagagagaaacattgCCCATCCATCTTAAAAAAGCGTGCTATGGTGTAATACTGTACACAGCCTTAAATCACACCTAATCCCTCTGTACGAGCAGAACCGCATTAACAGCATTCATTATGAGTATTAAAGTCACAGCAGTGGCAGGCTGAGTGTATGTAAGGGGGTTTTAACTGCTGATGATAGTGAATGGATCCTGAGACTCAAATCTCAGAATATCATGGAGAAGATGATAAAGAAGGGTGTCTAGGACGCTGTTAATTGGTCTTCTTTGCCCCCTCACTCACACAATTCAATCCATAATAATGATTATGAAtcataataatgattatttatttttcagcagtGATGACGGGCCTACACTGCTTAGCAAAAGTCTGACTGACGTGTTAGTGTTAATTTCACTGACATGATCAACTTTGAGATCTTTCTGATATTTCTTGATATGGCATTAAATTGATGCATTACTGTCGAAATACTGCATGTATTTAATGCACCAAGCCCTCCTTATAAGCATATATgtataattacagtaataataaaatgtagcaGAAACACAGACATATGCAAATGTTTGAAAACACAAATgggccaacaaaaaaaaaacctctctgTACTCAATTAATTCAGTTACTTCTTTATAtttaaggagattttattgtcatttcataTTAAGTGTGTTACATGAGGTAGAACCAAATTGTATTCCCACAGCCAAGAGCAATTTAACATAGATTaatataaagacaaaataaaatagagtaaaaatacaataataaaatacattttaaaaaatgtaatattatatattgtattaaatattaatagtaaATCAACTGTTAGGAGTCTATCCCATGGACTCTTTTTGATGTTAcgcagcatagtcacccagaccaggaattgaaccccagtctcccacatgatgggATAGCTGACTGGCAgggagtggtgttatccactgcaccagaCCAATCACCACCATCAGTGGTGTTCTCCACTGTTTCAGACCAATCACCAATCATCTGTATCTACAGACTTTTGCATATGACAGCAGATTGTGGTACGCAATACACAACATTATGTTGTAAAATAGAACaggtgttttttaatgctagtGATGCTACGTGTGCAGCTAAATTATTAGTTCTCTATCTTACAATTTCCCCAAAACAGTGCAAAATCTTACAATAATGTCATTTGttgtaataatgataatattatgATATCATTTCATCCACTTCTGCCACACACACCATGCTGTATCTTGTTCAGCATGTGTAGGACATACCCCTCTCTGTTTCCATATGCTGTTCCCCAGTGTGATTGGCCGGCCCTGTTAATGCCAGCCTTCCAGCCCCCTGCTGTCCGGCCCTCTGTACATCCCTGCTCACAACCTTCAGCTCTCCTCACTCTCACTAGAGACGAGCGATACCAGGAGTTTTTGGTATCGATCCAataccaagtaaacgcagggccagtattgccgatatcgataccgatatcgatactttttaatatttaatatttaattaacaaaacaatgtttagaacagaaacaaaacaaagtttaccttaacattaggaaaataaatgaggaaaaaacacaatacaaaaaaaaaatgtagtataAGTATCTGTCTTTTTACATGAGTACTGCTCAATATTAATACTAGTGTTGGTATCGATATTGTAGATATTTGaatcgatccgcccacctctctCCACTCTGCCCTTGTTCTCCGCGTTCTTTCACGCTTTATCACACGCAGTTCTGCAGCTCGTAGctgtgctgtagtgtagtgtgttctGAGTAACAACACGTATTACAGactgcattattattatgcacCGCCTGCTTCACCCTCTGAGACTTCACACTCTGAACACCCCCGTCCTTCCCCCTTTCCCTCGTTCTAAAACCGTCCTCACAACCTCAAACCCTTGCAGAATTGTGCTGTTAACCACAGCGCCGCAGGTTAATACTCTGCCATTTAAACTGCTCtttttaaaaactatattatGGCAGATCAGAGATTTGTTCTGAACGTTCGTTTGCATTAACGCCGAGCCGGGCTGCTTCTGACGTTTCATTACACGCCCAGATTTACCATATGAATGAGATGATCATGTGGGAGATAATGGCTTTGATtgagagagatgaagggtggagGCTGTTTTTCGGGAAAGATCCTTCAAGACATCAGCAGTGGAATGCAGAACTCTACAGAGcactaaaagtgaaagtaaagtaaatgggCAAtcgtctctctcttctcttcctcttccaCTACTTTCAtgtcttcttcctcttcttcttcttcttgtgcccactctttctctctctctctcttaattttCCCCAAACCTCCTCCACCTTCCAATGAAGAGTGCTGTGACTTTTTCAGCGCTCCTGTGTGATGATGTGTACAATCTGATtccatgtatttatttctgtatttttgccAACTttgtatagtgtaaaaaatatatataaatatatgaaaaattgAGAGTACTGTATAGATTTTAGCTGCCTGTCGACGGcacacagtatatataaatatataaatatataattggtAGAGTAAAACAGTCAGCTGTGTAGAAGCATTCTAAAGCCAGTTATATTGAGGTCATGCTTTTCTGTAAAGCCTGACGGTGCCACACTTCCTTTTTTATATTCTgccttttttttcagttcttttcgatgttactgtttgttttgttttgttatttttttttatatatatatataaatgatccGGTGGCATCGGAAGGTCCGTGTTGTTTATCGTTTATTACTTTGTAtgagttgtttgtttgttgtttgtttgttgattaACACAGCGAGGTTCAGGCGCCCGGGAGAGCGCATGGGAACGCAGAGTGGAcctgtgggagtgtgtgtgtttctatatgtgtgtgtgtgtgtgtgtgtgtgtttacaggaaCGTGAGTGTAGTTCTGGGTTGTTGCATTCTGTGCTGCACGCCTCGGTACTTTAACAGCACTCCACACCCATCTTCACATCAGAATTCTGGAGTCTGGAGAATCTCAGTAAAGCCACATTCTCATGCAGAATATCTGAACATGCCTTGTTGTTGTGTGCTGACCGCTGTCGACTCGGTTTTCTTTTCTCGGCCTGGTCAGGAGTGAGGTCAGAGTTCAGGGGCGTGACTGAGCTCCACCCGGCGACATGGAAGGATAAGCGTTCCCGTTTTTTTCTGCCTCTCCTGTTTTTTTGGCCGAGCGGACTGTGATTTAATTGGTTGATATATATGTTTTCCTGTCTGCCCCCACCCctctgtgtgtttgggtgtgtgggGTGGGTGGAGCTATGGAGCTGAGCTCTTACTATGTTctatgatataaaataaaataataataaaaaaaaatcaataatttgtACATCTGCAACTCCGGTGTGTTTATGTTCTCTTTACTAAGCTGTACTGTACTTATAATGTATCAGTGAAAATAATGGATGTTAAACAGatatttgtttgtatatttgattttaaatttaACCCCTTTAACccccttaaaggagaactccagggtaaaatggacttttgatgtagtaaaacaagataaaaagtacttatctttgatgaatagcacacttTCGTTCttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102738 lncRNA upstream 3644 24527631 ~ 24563160 (+) True G76225
TU102727 lncRNA upstream 104245 24441085 ~ 24462559 (+) True G76217
TU102729 lncRNA upstream 110113 24454211 ~ 24456691 (+) True G76219
TU102682 lncRNA upstream 275078 24289392 ~ 24291726 (+) True G76202
TU102676 lncRNA upstream 286014 24279494 ~ 24280790 (+) True G76197
XR_002650269.1 lncRNA downstream 36775 24696319 ~ 24698722 (+) False LOC111193114
XR_002650271.1 lncRNA downstream 36775 24696319 ~ 24698722 (+) False LOC111193114
XR_002650270.1 lncRNA downstream 36775 24696319 ~ 24698722 (+) False LOC111193114
TU102914 lncRNA downstream 261591 24921135 ~ 24922440 (+) True G76349
TU102942 lncRNA downstream 322421 24981965 ~ 24983407 (+) False LOC103022391
XM_007235123.3 mRNA upstream 165079 24361414 ~ 24401725 (+) False LOC103029007
XM_022672399.1 mRNA upstream 165079 24381932 ~ 24401725 (+) True LOC103029007
XM_015601840.2 mRNA upstream 165079 24384516 ~ 24401725 (+) False LOC103029007
XM_007235125.3 mRNA upstream 207629 24342743 ~ 24359175 (+) True LOC103029535
XM_007235137.3 mRNA upstream 341090 24211986 ~ 24225714 (+) True drd4
XM_007235121.3 mRNA downstream 65600 24725144 ~ 24740083 (+) True fads2
XM_022672386.1 mRNA downstream 142458 24802002 ~ 24860926 (+) True myrf
XM_022672387.1 mRNA downstream 144889 24804433 ~ 24860926 (+) False myrf
XM_022672385.1 mRNA downstream 144891 24804435 ~ 24860926 (+) False myrf
XM_022672388.1 mRNA downstream 144892 24804436 ~ 24860926 (+) False myrf
TU102670 other upstream 306298 24258509 ~ 24260506 (+) True G76192
TU102479 other upstream 528943 24032100 ~ 24037861 (+) True LOC103038709
TU102363 other upstream 649201 23915791 ~ 23917603 (+) True G75974
TU102309 other upstream 1078934 23487530 ~ 23487870 (+) True G75938
TU102047 other upstream 1794243 22755152 ~ 22772561 (+) False LOC103028957
TU102912 other downstream 213856 24873400 ~ 24880941 (+) True LOC111193110
TU102913 other downstream 213856 24873400 ~ 24879892 (+) False LOC111193110
TU102930 other downstream 287244 24946788 ~ 24948149 (+) True G76358
TU103035 other downstream 524541 25184085 ~ 25184732 (+) True G76423
TU103131 other downstream 634957 25294501 ~ 25296468 (+) True G76464

Expression Profile