RNA id: XR_002650271.1


Basic Information

Item Value
RNA id XR_002650271.1
length 1079
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC111193114
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24566804 ~ 24710951 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGACTGCATTGTATTATGCATTTTACTCATTGCTACATTCTCTTCCTCCTGCCAATAACAGGGTAGAACAGGCCAGACACATCCAAGTGTGATGAGCATGGACTTCCTGCCAACAGCTTACCTtcaggtgtctctctctcttgctctcacttTCTTACTTACATCCTTGTCTGTATTCATTCTTCACCGGCTACAGAAGAATGATACaattgtgagtgtgtgcatatatcagatgtgtttatgtatttgtGTATCAGGGCAGCGGTATGATCCCCAAACTGATCCGTCTACGACTCCTTGAGAGACAGCGTTCAGCAGAGACATTGGAGATCCTCCGGTGTGCCCTAATTTAAAGCTGCCTGGGAAATAACAGAGGCTCACACAAATGAGAAGAATGAGTTCAGCAGACGAGACACagacaggtttaatctgtgtggaTATTAACCCAGGCATTttcaataaatgtataattactgATTCAAGTGTAATATTGCCATGTTCACATTTCTCCTGATCGTCATGGTTAAATCATCTCAGTATGACATTTTCACACTGAATAATATTAATCTTTACAAATGCTGTTATTAGCAAGGCAAATGACGGTGGCTGTAAAAGCAGCACTTTAGGCCATTATGAGAGCGCAGGGCATTTAGACAGTGTGGCCTGATGGACATTAGGATGAATGCTGGGGCAGAGAAGCATCGCTTAGTTAAACACCTCACATCCATGAAACTGCCAAATGGACCTGATTAGCCATGCATggaatgacacacacacacacacatgctgctgGCCATGCAATGAGAGACACAGAGTCACATATTCATAGCTCAGGTGGCAGGCATACTGGGGACACAGCACTCAgctcagattaaaaaaatgtgtgtgtgtgtgttttgggtgtgtgtatatgtatgtttgttttccattttccaGAAAAAACATCCTGAAGCTCTAAACTCAATCTGTAAAACAATACATACCTATGTGAATTACATGATAATGTGTTCAtgtttttcatacattttattatatgaaTGTATTAAGCAACATTTTAATATCCCTTTTCTAATTCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102723 lncRNA upstream 36775 24566804 ~ 24659544 (+) False LOC111193114
TU102725 lncRNA upstream 37011 24616151 ~ 24659308 (+) True LOC111193114
TU102739 lncRNA upstream 110187 24561664 ~ 24586132 (+) True G76226
TU102738 lncRNA upstream 133159 24527631 ~ 24563160 (+) True G76225
TU102727 lncRNA upstream 233760 24441085 ~ 24462559 (+) True G76217
TU102914 lncRNA downstream 222413 24921135 ~ 24922440 (+) True G76349
TU102942 lncRNA downstream 283243 24981965 ~ 24983407 (+) False LOC103022391
TU102943 lncRNA downstream 285430 24984152 ~ 24984391 (+) True G76367
TU102947 lncRNA downstream 289732 24988454 ~ 24991599 (+) False LOC103022708
TU103124 lncRNA downstream 580293 25279015 ~ 25279623 (+) False LOC103026466
XM_007235122.3 mRNA upstream 48770 24426129 ~ 24647549 (+) True LOC103028282
XM_007235123.3 mRNA upstream 294594 24361414 ~ 24401725 (+) False LOC103029007
XM_022672399.1 mRNA upstream 294594 24381932 ~ 24401725 (+) True LOC103029007
XM_015601840.2 mRNA upstream 294594 24384516 ~ 24401725 (+) False LOC103029007
XM_007235125.3 mRNA upstream 337144 24342743 ~ 24359175 (+) True LOC103029535
XM_007235121.3 mRNA downstream 26422 24725144 ~ 24740083 (+) True fads2
XM_022672386.1 mRNA downstream 103280 24802002 ~ 24860926 (+) True myrf
XM_022672387.1 mRNA downstream 105711 24804433 ~ 24860926 (+) False myrf
XM_022672385.1 mRNA downstream 105713 24804435 ~ 24860926 (+) False myrf
XM_022672388.1 mRNA downstream 105714 24804436 ~ 24860926 (+) False myrf
TU102670 other upstream 435813 24258509 ~ 24260506 (+) True G76192
TU102479 other upstream 658458 24032100 ~ 24037861 (+) True LOC103038709
TU102363 other upstream 778716 23915791 ~ 23917603 (+) True G75974
TU102309 other upstream 1208449 23487530 ~ 23487870 (+) True G75938
TU102047 other upstream 1923758 22755152 ~ 22772561 (+) False LOC103028957
TU102912 other downstream 174678 24873400 ~ 24880941 (+) True LOC111193110
TU102913 other downstream 174678 24873400 ~ 24879892 (+) False LOC111193110
TU102930 other downstream 248066 24946788 ~ 24948149 (+) True G76358
TU103035 other downstream 485363 25184085 ~ 25184732 (+) True G76423
TU103131 other downstream 595779 25294501 ~ 25296468 (+) True G76464

Expression Profile