RNA id: XM_022672405.1


Basic Information

Item Value
RNA id XM_022672405.1
length 1549
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC103025724
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24791192 ~ 24798616 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagagactgactggAACAGACTGTATATATCAACCTGTGCTGAGGCTCCTCTTCAGTAGATGGcgctgcagacagacagacagctgaACTGAggggctgagagagagagagacagggcaCAGAGCAACATGGCGATAGGGAGAGCAGGTACGCTGCGGGGTTGCTATAGATACGGCAGACATTCCAGTGTTCTCTCTTCTGTTCTCCTGCAAATCCTGCTCTACCTTTCTTCAATATATGGCTTATTCTACTTCATTTCCAGCCTTTGCCTAATCATatacaaaaGCCAGGTGCTGAGTTACCCTGACAGTGATTTGGCTCTGGATGTATGTTTACTCCTACTTATGGCTGGCCTGGATGTCATCAGACTATATTGGGGAGTAAGAGGAAACCTGCTGGAGAGTGAGAAGTATATAAGTGCCAACCTATTCAGCACAGGAGCCACAGTGCTGCTGGCAGTGTATTTCCTGGTTTGGCAGTCGTATGTGCTGAGAGCTGATGTGATCATTAACAGCATCCTGCTCTGTCTCTATGGCCTCGCTGGAGTAGTCGGCTTTGGAGCCCTTGCACGCTTCAACAGAGCATACTCATGACTGAACGGGTGGGTTTATTCCTGTGGTATTTATCCTTGGCTGCAGATGCCCCCGACTTATTCATGACTGGACTGCTGCACATCCTCTAACTTACCAACCAGCATCAGCCTAAAGCAGGAGGAAGTGTCTGAAGAGATCAGTTGCTATGCAATGAACTATTTGTTGTTTTCAGTATAGTTAGCTGATTTCAGCTGTTCAGTGGTTTGTTGTGGGGGTTATAGAgggagaatattttttatttcttatattggTGTGGTTGTTTTTCCAACTTTTCTACAAATGTGGCAAAAGATGGAGGACTCAGTTTAGAAACTGAAGAAAAGCTGTAATTGTGATTTTCATTTGATATAAATCAGTTATTTCAGAGCTGTTGGTTGTTAACCCCTGACGGGAGTGAAGGGTGTAACTCCGACGAAACGGGGGTTCGGCTCAGACAATAACCCAGAGAATACATGGTGTATGAAGTCTGTAGCAACTTGCAAAAACCAAGAAGCATTTTGCAGAACCAAAGTTCACAGGCGAGTTGCTGGAAAATTTACACTGTACACCATCACTATTAGCAACTTGCAACTGATTTAGCCTACCATGCTAAGTGTAGCTATAAGTGTATGTGCTGAGTAGAAGTGGCACACACAGGTTCTTGAGGCCCCACCTACGTATTATAAATAAGGATAGTGGGTGGTGGATCGAATGAGGACAGTGTGTCAGCAGCGCTATGTGCTCGTTATGGGATATATTTGTGAAAACATTCTAACATGCTAATACAGTTAATGGCATTCTCCAGGCATTCTGATAACCACATTTCAACAAAttcacacattttctttttttttactttattattttcagtTTGGAGCCCAATGTTAACTTGTATAACCATACGTAAAAGTGTAATACAACATCTGGCAATATTTAAGTTCCATTGTTATAATAAAGTTACTAAAGTTGAATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102816 lncRNA downstream 54923 24727311 ~ 24736269 (-) True G76292
TU102809 lncRNA downstream 75654 24715210 ~ 24715538 (-) True G76288
TU102795 lncRNA downstream 131900 24633827 ~ 24659292 (-) True G76274
TU102789 lncRNA downstream 252505 24528071 ~ 24538687 (-) True G76272
TU102782 lncRNA downstream 389479 24395212 ~ 24401713 (-) True G76266
TU102882 lncRNA upstream 47582 24846041 ~ 24860482 (-) True G76340
TU102883 lncRNA upstream 47582 24846041 ~ 24860482 (-) False G76340
TU102879 lncRNA upstream 60548 24859007 ~ 24860482 (-) False G76340
TU102962 lncRNA upstream 93702 24892161 ~ 24892392 (-) True G76372
TU102971 lncRNA upstream 122714 24921173 ~ 24922447 (-) True G76376
XM_007235116.3 mRNA downstream 2834 24742769 ~ 24788358 (-) False eps8l2
XM_007235115.3 mRNA downstream 2834 24742769 ~ 24788358 (-) False eps8l2
XM_022672396.1 mRNA downstream 2835 24742769 ~ 24788357 (-) False eps8l2
XM_022672395.1 mRNA downstream 2835 24742769 ~ 24788357 (-) True eps8l2
XM_007235119.3 mRNA downstream 18243 24742769 ~ 24772949 (-) False eps8l2
XM_015601831.2 mRNA upstream 214834 25013293 ~ 25101100 (-) True LOC103023960
XM_022672421.1 mRNA upstream 484330 25282789 ~ 25301768 (-) False rab3il1
XM_022672420.1 mRNA upstream 484330 25282789 ~ 25301768 (-) True rab3il1
XM_022672422.1 mRNA upstream 484330 25282789 ~ 25296378 (-) False rab3il1
XM_022672423.1 mRNA upstream 484330 25282789 ~ 25296377 (-) False rab3il1
XR_002650267.1 other downstream 602990 24184569 ~ 24188202 (-) True LOC111193112
XR_002650263.1 other downstream 2277468 22456331 ~ 22513724 (-) False LOC103024007
TU101746 other downstream 3518175 21270129 ~ 21273017 (-) True LOC111193105
trnat-agu_2 other downstream 3895016 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 4690942 20087418 ~ 20100250 (-) False hsd17b12
TU102973 other upstream 115839 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 150585 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 385750 25184209 ~ 25184469 (-) True G76424
XR_002650273.1 other upstream 490391 25288850 ~ 25301768 (-) False rab3il1
XR_002650274.1 other upstream 491423 25289882 ~ 25301768 (-) False rab3il1

Expression Profile