RNA id: TU102882


Basic Information

Item Value
RNA id TU102882
length 2040
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G76340
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24846041 ~ 24860482 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aTGTAACCCAGGTTACTAAAGCTGACACCCTTTAGAGAAATTACCCCTAGTAAGTATTATAGATTATCAAGTCCTAACGAATaagatgaaaataataaaatattaattaattaaaatattaattaattaaaatattaaagaactaaaaatataattaataggaATTTCTTTGTGAAttgaaattagaaaaaaaaaagaactaaataattatttcagaaaatacttattttaaaaataaggcAACTATTTCTTTAAATCTGACCAGCAGTGGTAATAGGACAACCCCTATCGCGCCAATTTTATCCAGTAGAAACCCTGAAACAGATCACGCCACTATTTTAACCAATAGATAACTCTGAAGCAGCCTACTGCGCGGGAAGaccaaccaatcagcagctTAGTAAGTTAGTCTAGTACCCCCTGTGTGGAAAACGCATTCACTCTTGAGTTGGAAGCTGAACCGTGCGGATCGCGGCACAGCTATCGCGCTGAGAATAGAAAGCTACGTTGAGATATAAGTACCTCATACGTGAGTAATGCTTATTAGCCATCGGTACTAACGCTAGACGGCTAACAAGCAGTTCGGTCGTGTAAACCGGCGAGAGGATTTGTAACAGAGACGGAGTTATTCCGAGGTGAGCCGAGTGTACCGCGGATCGCTTAGTCATCGCCGCGGTGAGCCGAGTCTGTACAGCGGATCGCTTAGTCATCGCTGCGGGACACAGAGTCTTCACCGCGATCGCTTTGTCATCACCGCAAGGAGCCGATTCTTCGCTGTGAATCGTTTCGTCGCCCGAGCGGGAGCCGAGTCCTTGACGCGGATCCCAgactaacaaaaaataaaagaattccGGATCGGATTTGGTGAGTTCTACACTTTAAAAGCTGGTATTTTGGTTGGTTTTACGTGCATAGGTGAAGGTATAactgtttagctaagctaataagAGTGGGTTAAGCAAATCTTTTTCAATTGTAcccttttttttctgatgagTTAAGGCTGTAATTCTGTAATGTTTAATACTACTGTGCTGTGATATATTAACGCTAAGTTTGGGATGTTAGATGTGTAACCAGAGACATAAGAACCTAAAAGGCTACTGTAAATAGTTGTTAAATGTTaggaaaaaaaatctgattgAGCACTAAAAGCCATGTTTCATATGAATAGGCCAGTTTCCCTGGGGATGAATCTTACTGATCTGCTCTGACCTGCCGCCTGGGTGCGAGAGTCCAGTCGAGTGGGACACGAGCTGGCGAGCCACGGTCCACGGAACTTCGTACCCGAGCATTGATTCTGAGTATCCCATATTTTTGAGGTTGGACTGTTTTTCCAACTACTCTGAGTGAGTTACACTGCGCTAAACATAATAGACTGAAGTTCTCTAATCTCTAAAGGTTACTGGAAGCGCTAAACCTTCACTAGAGACTTTTATCTTGTTGAAATCCACACCTTtactatatttcttttattgaatttaattgaatgatTGGGTTGAATTCTTTTGAACTTAATTTACTgttgaatcatttatttttgttattttggttaaTTGTTTGGTTATATTGTTACTGTGAAACATtgggaatcatttatttttgttattttggttaaTTGTTTGGTTATATTGTTACTGTGAAACATtgggaatcatttatttttgttattttggttaaTTGTTTGGTTATATTGTTACTGTGAAACATTGGGAATCATTTATTCTGTTGGAAAAAGAAATCTGAGACTGAAAACtgtgtaaattatattatagaatAATATAAATACCATACTTACCTCTTAACCTGCAAAATAGACAATACCTACCTTAAATACTTACCATAATTCCctaattatacttaccttagATATTGATCCAAAACCCCTAACTTAAAACCtaaaataaggaaaagaaaCCGATGATTAAAAACCctaataaaacctaaaataaggaaaagaaaCCGATGATTAAAAACCctaataaaacctaaaataaggaaaagaaaCCGATGATTAAAAACCctaataaaacctaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102870 lncRNA downstream 48822 24791248 ~ 24797219 (-) False LOC103025724
TU102816 lncRNA downstream 109772 24727311 ~ 24736269 (-) True G76292
TU102809 lncRNA downstream 130503 24715210 ~ 24715538 (-) True G76288
TU102795 lncRNA downstream 186749 24633827 ~ 24659292 (-) True G76274
TU102789 lncRNA downstream 307354 24528071 ~ 24538687 (-) True G76272
TU102962 lncRNA upstream 31679 24892161 ~ 24892392 (-) True G76372
TU102971 lncRNA upstream 60691 24921173 ~ 24922447 (-) True G76376
TU102974 lncRNA upstream 70421 24930903 ~ 24934729 (-) True G76378
TU102976 lncRNA upstream 73909 24934391 ~ 24937062 (-) False G76378
TU102987 lncRNA upstream 76712 24937194 ~ 24946682 (-) True G76385
XM_022672404.1 mRNA downstream 47425 24791192 ~ 24798616 (-) False LOC103025724
XM_022672406.1 mRNA downstream 47429 24791192 ~ 24798612 (-) False LOC103025724
XM_007235111.3 mRNA downstream 47573 24791192 ~ 24798468 (-) True LOC103025724
XM_007235113.3 mRNA downstream 47575 24791192 ~ 24798466 (-) False LOC103025724
XM_022672405.1 mRNA downstream 47582 24791192 ~ 24798459 (-) False LOC103025724
XM_015601831.2 mRNA upstream 152811 25013293 ~ 25101100 (-) True LOC103023960
XM_022672421.1 mRNA upstream 422307 25282789 ~ 25301768 (-) False rab3il1
XM_022672420.1 mRNA upstream 422307 25282789 ~ 25301768 (-) True rab3il1
XM_022672422.1 mRNA upstream 422307 25282789 ~ 25296378 (-) False rab3il1
XM_022672423.1 mRNA upstream 422307 25282789 ~ 25296377 (-) False rab3il1
XR_002650267.1 other downstream 657839 24184569 ~ 24188202 (-) True LOC111193112
XR_002650263.1 other downstream 2332317 22456331 ~ 22513724 (-) False LOC103024007
TU101746 other downstream 3573024 21270129 ~ 21273017 (-) True LOC111193105
trnat-agu_2 other downstream 3949865 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 4745791 20087418 ~ 20100250 (-) False hsd17b12
TU102973 other upstream 53816 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 88562 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 323727 25184209 ~ 25184469 (-) True G76424
XR_002650273.1 other upstream 428368 25288850 ~ 25301768 (-) False rab3il1
XR_002650274.1 other upstream 429400 25289882 ~ 25301768 (-) False rab3il1

Expression Profile