RNA id: TU102988


Basic Information

Item Value
RNA id TU102988
length 2117
lncRNA type inter_gene
GC content 0.38
exon number 7
gene id G76385
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24937194 ~ 24946682 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtatagatttttatttaagtttatttgtttaagtaTGATTTATGTGGTTAATAACATCACTTTAGAAATATGACTATAGATAGCTGCAGTGGTTTAGATAACAGCTCTAAATGTTACAGACAAggcatgaaaaataaaaacaggccCTTTACTTTTACAAGATTATCAAAACATATTCAGAAGATAAAATAACCTTTAGAAGCGGAGTATTAGAATAGTTTAGTGCCAGTCAGAATTTACTAGCAAAAAATAGCTGTTAACATTTTGAGGCTGGTTTTATTTGGCAGCATGACACAAGAGGAGaattcagagttcagagaaGTGAAGACTTTAGAGTCCAAGTGCTTCTTCTTTGACCTGGCAGCCCAGCAGAGAATTACCTGCCTGAACACACTCAGAAAGGTTGGCCACTTTCTGGTTTTGGATCCACGTCACTGCTTTCATGGCCACAAACTGCCATTCAacctgatcatccatcttaaaGCCATGTAACCAGATAAGAGCCAGAATTGTAGCCCAGACCCCCTTATCCACCTGTGCGGGGGTCTGCTTGACTACCTCATCTTCTGGCTTCCCAAACACTTTCACCAGAGCGTTGCCCATTTCCCAGCAGCCTGAGGCCTTCTGAAGGGAAATGAGCTCCAGCAAGTGGTCCTCAACAACATCAGGCGGAAGCATATCTGAGATGTCTTCACAATCGTTACAGGAGGATACAAGACCtttgaaaaagaaatgaaagagtgCATTAATTCTACAgaatgtatagtgtgtatagtctTCTACTAATACTAAAAGATCTCacagaaacaaatacaaaatggtACAGAGAGGATCATTAAAAGGCAATTTTACACTGATTATACTATTCTATTCCAAATATATTCTTAACAAAAATATGTTCTTCACAATCGAGGACTGACCATACTACCATTTTTTAAACAGCAAATTGCAAACTGATTTCCCAATAAACCAGATACTTTTCAGAAAAGAGTTACAACAGACCAATAATCGTCTATATGTGGTAGCATGAaatgcttaataataattactgttattaaatatGACAGTTTCCATGTTTAGTGCAGTCATGTAGCCCATCAACAAAATGATACAGAATTattagtatataataatatgtttgCACAGTCAGatctatcttttttttcaggtaTGTGCAACAAGTCAGGATTTCCACTATTTTTTAGgaaaacatttttatagaaCTCTAATGCATGATAACATACATACAAAGCCTAAATCCTGTTTTATGTACATGGTTACTAAATGAACTTACTAGACGTACATCACCTATTACAATATGCAAATCTCTGCCATAagttgcaaaaatattttatcaaatGTAAGACTTGTTGTTTTTAGAACTGTCCTGGGATTCTAGTGTTATTTTGTGAATTTAAACAGAAGCATTATAGAAAACTGCAAGTGCAGGTCAGATAGAAAGTTATGAACAGTtgctgataaaataaaataactgaggATTAACAAGAACAGATTGCTAATACAAACGggactcctgttttttttattttataagttgGGACTTATGGAGTTCACTAAGCACTGTATGACATGATGCGGGTATAGCATACTAGTCCACCTGACAGAGCAGCATTACAAGCTTTTATAAACAGAGCATCATCTAACTGCAAATAGTGGGCAAGTGCGCATGGGCTGTGGCCATGTCTTATTCACAAACCTCAGTAATAAGTTTATAAGCATTTAATTATACAATCATGTATACTGTATAACTTCTTTATTTCAATTAAAGTGTGAATACTTACGCAAAACCCTTGCCATTGGAGGAGCAGCACAGGCCATTGCCATAGGCATACTTCTAAACCTcaTTGCTGTGGGCACTCTCCTCTTCAACATTGGTCCTTCCACCGCCTCTCCACTGCCCTTATGAACAGCGatgaaagcagtgtgtgagcagcTCACTCCAGCCTCCACACTGAGCTCCACCACTCTGGCCTTCAAGGCCTCTTTCTCTGCTCCCTCAGTCTGCTCCTGCCGTTCCAGAGAGCGGATCAGAGACCGGGCAGCCAGTCTGTGAATGGAGAGTCTgcgcacacaaaaacacagagttTGAGTTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102976 lncRNA downstream 2532 24934391 ~ 24937062 (-) False G76378
TU102974 lncRNA downstream 4865 24930903 ~ 24934729 (-) True G76378
TU102971 lncRNA downstream 17147 24921173 ~ 24922447 (-) True G76376
TU102962 lncRNA downstream 47202 24892161 ~ 24892392 (-) True G76372
TU102879 lncRNA downstream 79112 24859007 ~ 24860482 (-) False G76340
TU102994 lncRNA upstream 6161 24952843 ~ 24959934 (-) True G76388
TU103032 lncRNA upstream 173241 25119923 ~ 25126916 (-) True G76421
TU103094 lncRNA upstream 261148 25207830 ~ 25213026 (-) True G76438
TU103095 lncRNA upstream 261148 25207830 ~ 25213026 (-) False G76438
TU103096 lncRNA upstream 261148 25207830 ~ 25213026 (-) False G76438
XM_022672404.1 mRNA downstream 140978 24791192 ~ 24798616 (-) False LOC103025724
XM_022672406.1 mRNA downstream 140982 24791192 ~ 24798612 (-) False LOC103025724
XM_007235111.3 mRNA downstream 141126 24791192 ~ 24798468 (-) True LOC103025724
XM_007235113.3 mRNA downstream 141128 24791192 ~ 24798466 (-) False LOC103025724
XM_022672405.1 mRNA downstream 141135 24791192 ~ 24798459 (-) False LOC103025724
XM_015601831.2 mRNA upstream 66611 25013293 ~ 25101100 (-) True LOC103023960
XM_022672421.1 mRNA upstream 336107 25282789 ~ 25301768 (-) False rab3il1
XM_022672420.1 mRNA upstream 336107 25282789 ~ 25301768 (-) True rab3il1
XM_022672422.1 mRNA upstream 336107 25282789 ~ 25296378 (-) False rab3il1
XM_022672423.1 mRNA upstream 336107 25282789 ~ 25296377 (-) False rab3il1
TU102973 other downstream 19229 24914298 ~ 24920365 (-) True G76377
XR_002650267.1 other downstream 751392 24184569 ~ 24188202 (-) True LOC111193112
XR_002650263.1 other downstream 2425870 22456331 ~ 22513724 (-) False LOC103024007
TU101746 other downstream 3666577 21270129 ~ 21273017 (-) True LOC111193105
trnat-agu_2 other downstream 4043418 20896103 ~ 20896176 (-) True trnat-agu_2
XR_002650272.1 other upstream 2362 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 237527 25184209 ~ 25184469 (-) True G76424
XR_002650273.1 other upstream 342168 25288850 ~ 25301768 (-) False rab3il1
XR_002650274.1 other upstream 343200 25289882 ~ 25301768 (-) False rab3il1
TU103672 other upstream 1916732 26863414 ~ 26868817 (-) False LOC103031319

Expression Profile