RNA id: TU103032


Basic Information

Item Value
RNA id TU103032
length 494
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G76421
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25119923 ~ 25126916 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATTCTGCCCTCACTTCAAACCCCGGTTCATCAGCTAGGCAGATAGACAACTTGTCCAAACACTCTTGAGGTTGAAAATGGATTTATTTGTCACCATTCAGAGGAAGAGTGCGCCAGGAACTcagtaaaactaaaacacacaaatggtttcacatgaacacacacttaGTAAGAGTAACAGCTATGATACCAAAAATAAAGCAGTTTTACAGTTGTCTATATCAAATAAACTGTTAACATGAATCTTTAGCACGATTATATAACATGTACTTACAGACGATGCCTGGATTAATGATTGCACGCAAGATGGAAGGAGATTCTTTTTAGAACAGCAAGCTGTGCAATGTCATGCTCACAATGAGCTCTACCACCATACAGGAAACAGGATATTGCATCACCTAGTGGCAAGCAGTACTAAGAAATTGTGCCACCTAGTGGCAAAAAGAAATAACACAATGAaacacatacaatacaatacaaaacaattcaGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102994 lncRNA downstream 159989 24952843 ~ 24959934 (-) True G76388
TU102987 lncRNA downstream 173241 24937194 ~ 24946682 (-) True G76385
TU102988 lncRNA downstream 173241 24939594 ~ 24946682 (-) False G76385
TU102976 lncRNA downstream 182861 24934391 ~ 24937062 (-) False G76378
TU102974 lncRNA downstream 185194 24930903 ~ 24934729 (-) True G76378
TU103094 lncRNA upstream 80914 25207830 ~ 25213026 (-) True G76438
TU103095 lncRNA upstream 80914 25207830 ~ 25213026 (-) False G76438
TU103096 lncRNA upstream 80914 25207830 ~ 25213026 (-) False G76438
TU103098 lncRNA upstream 80914 25207830 ~ 25213026 (-) False G76438
TU103118 lncRNA upstream 109538 25236454 ~ 25238013 (-) True G76453
XM_015601831.2 mRNA downstream 18823 25013293 ~ 25101100 (-) True LOC103023960
XM_022672404.1 mRNA downstream 321307 24791192 ~ 24798616 (-) False LOC103025724
XM_022672406.1 mRNA downstream 321311 24791192 ~ 24798612 (-) False LOC103025724
XM_007235111.3 mRNA downstream 321455 24791192 ~ 24798468 (-) True LOC103025724
XM_007235113.3 mRNA downstream 321457 24791192 ~ 24798466 (-) False LOC103025724
XM_022672421.1 mRNA upstream 155873 25282789 ~ 25301768 (-) False rab3il1
XM_022672420.1 mRNA upstream 155873 25282789 ~ 25301768 (-) True rab3il1
XM_022672422.1 mRNA upstream 155873 25282789 ~ 25296378 (-) False rab3il1
XM_022672423.1 mRNA upstream 155873 25282789 ~ 25296377 (-) False rab3il1
XM_007235184.3 mRNA upstream 190210 25317126 ~ 25327553 (-) True mpi
XR_002650272.1 other downstream 169901 24949044 ~ 24950022 (-) True LOC107197705
TU102973 other downstream 199558 24914298 ~ 24920365 (-) True G76377
XR_002650267.1 other downstream 931721 24184569 ~ 24188202 (-) True LOC111193112
XR_002650263.1 other downstream 2606199 22456331 ~ 22513724 (-) False LOC103024007
TU101746 other downstream 3846906 21270129 ~ 21273017 (-) True LOC111193105
TU103036 other upstream 57293 25184209 ~ 25184469 (-) True G76424
XR_002650273.1 other upstream 161934 25288850 ~ 25301768 (-) False rab3il1
XR_002650274.1 other upstream 162966 25289882 ~ 25301768 (-) False rab3il1
TU103672 other upstream 1736498 26863414 ~ 26868817 (-) False LOC103031319

Expression Profile