RNA id: TU103124


Basic Information

Item Value
RNA id TU103124
length 327
lncRNA type sense_over
GC content 0.55
exon number 3
gene id LOC103026466
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25271256 ~ 25281371 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACGTACCCTCCACCCTGACCAGCTGCTgccctgcacacacaccaacatcACACACTTCAACCTCTCTGCCTGGAAGGAGCCAGACACCGATCCAGTGTGTGGATCCATCCCCAGGCTGAAGGTGGGTTTTTCTGTACTGTGTGATTCTACAGTGCTGTACCAGTGTCCCACTGGCTATCTGCTTCATGGAGCCTCACACATCACCTGCGACTCCAACACACACCTTTGGACCCCACTTCCCCCTACCTGTCAagATATAGATGAGTGCTCCAGGCAGCCTTCTGTCTGCCCTCCAAACTTGCAGTGCCACAACACACTCGGCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102947 lncRNA upstream 287416 24988454 ~ 24991599 (+) False LOC103022708
TU102943 lncRNA upstream 294624 24984152 ~ 24984391 (+) True G76367
TU102942 lncRNA upstream 295608 24981965 ~ 24983407 (+) False LOC103022391
TU102914 lncRNA upstream 356575 24921135 ~ 24922440 (+) True G76349
XR_002650271.1 lncRNA upstream 580293 24696319 ~ 24698722 (+) False LOC111193114
TU103128 lncRNA downstream 13782 25293405 ~ 25293928 (+) True G76463
TU103141 lncRNA downstream 37572 25317195 ~ 25318657 (+) True G76468
TU103149 lncRNA downstream 43770 25323393 ~ 25327069 (+) True G76472
TU103191 lncRNA downstream 76641 25356264 ~ 25359567 (+) True G76505
TU103205 lncRNA downstream 105664 25385287 ~ 25390947 (+) True G76514
XM_022671928.1 mRNA upstream 7761 25269678 ~ 25271254 (+) True LOC111193062
XM_007235182.3 mRNA upstream 15800 25249630 ~ 25263215 (+) True hps5
XM_007235181.3 mRNA upstream 32237 25236419 ~ 25246778 (+) False gtf2h1
XM_015601852.2 mRNA upstream 32237 25236421 ~ 25246778 (+) False gtf2h1
XM_022672417.1 mRNA upstream 32237 25236647 ~ 25246778 (+) True gtf2h1
XM_007235183.3 mRNA downstream 22612 25302235 ~ 25312163 (+) True LOC103045999
XM_015601854.2 mRNA downstream 22612 25302235 ~ 25312163 (+) False LOC103045999
XM_022671895.1 mRNA downstream 33668 25313291 ~ 25316315 (+) False LOC103027043
XM_022671894.1 mRNA downstream 35377 25315000 ~ 25316315 (+) True LOC103027043
XM_015601855.2 mRNA downstream 47943 25327566 ~ 25346047 (+) True LOC103046607
TU103035 other upstream 94283 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 330866 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 398074 24873400 ~ 24880941 (+) True LOC111193110
TU102913 other upstream 399123 24873400 ~ 24879892 (+) False LOC111193110
TU102670 other upstream 1018509 24258509 ~ 24260506 (+) True G76192
TU103131 other downstream 14878 25294501 ~ 25296468 (+) True G76464

Expression Profile