RNA id: TU103191


Basic Information

Item Value
RNA id TU103191
length 717
lncRNA type inter_gene
GC content 0.57
exon number 4
gene id G76505
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25356264 ~ 25359567 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCCAGCAGAGGGGTGCAGGGTAAGGCAGAGCTGGGGGGTTGTGAGCTGAGACGGTGACAGTGGGTACAGCGAAGCTCTTCATGGGGTGTGTGGGGTGAACGTGGGCTGTGGGGGGCTTGTAGGAAGGTGGGTCCTCTTCTTTAATCAGAGCTTCTGTCTGCTGCAGTTCTGTTGTGCTGGGAGGCTGAGTCAGGATCACCGGGGGCTCAGGGGCCGGAGGCTGCGTCCGCACAGACTCTGATGAGGGAGCCCTGTCTAAATAAGGCCCAGGGGTGGAGGGTGTGGCAGGAGCCCTCAGACTGATCTGATGATGGAGGTAACCACGAGGAGGAGGGTGatagtgatggtggtggtgatgatggaggTAGTCAACAGAATGGATGGGATGGGCACTAATAACAGGTTGTGGAGGCTGCGAGTCGAAGGGCATCATTATTTTGGGTCTCACTCCTTTTCTTCCTGCCAGTGTAGAAACACTCTCCTCAATCTCATGACCTCGGAATGAGTTGCGTCTCGGGTGGCCCGCCTCGCTGGAGGGGTCCTGGCTGTTGCGGGAGATGGGGGTTTCAGTCATGACCGGGTTCGGCTCAGGGGATTTGTCTATGGGTTTCATCTCCAGACGCTCGTGGTGGATCCAGAGGTCAGGAGGCTTCAGGTCTTTAGATGTGCTTTTGTACTTGTGGGAGCCGTTAGTGGGCTTGCAGGCTGCTCGCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103149 lncRNA upstream 29195 25323393 ~ 25327069 (+) True G76472
TU103141 lncRNA upstream 37607 25317195 ~ 25318657 (+) True G76468
TU103128 lncRNA upstream 62336 25293405 ~ 25293928 (+) True G76463
TU103124 lncRNA upstream 76641 25279015 ~ 25279623 (+) False LOC103026466
TU102947 lncRNA upstream 364665 24988454 ~ 24991599 (+) False LOC103022708
TU103205 lncRNA downstream 25720 25385287 ~ 25390947 (+) True G76514
TU103218 lncRNA downstream 191278 25550845 ~ 25551311 (+) True G76526
TU103233 lncRNA downstream 276264 25635831 ~ 25642628 (+) True G76539
TU103236 lncRNA downstream 276913 25636480 ~ 25643923 (+) True G76540
TU103237 lncRNA downstream 277404 25636971 ~ 25645135 (+) True G76541
XM_015601855.2 mRNA upstream 10217 25327566 ~ 25346047 (+) True LOC103046607
XM_022671895.1 mRNA upstream 39949 25313291 ~ 25316315 (+) False LOC103027043
XM_022671894.1 mRNA upstream 39949 25315000 ~ 25316315 (+) True LOC103027043
XM_007235183.3 mRNA upstream 44101 25302235 ~ 25312163 (+) True LOC103045999
XM_015601854.2 mRNA upstream 44101 25302235 ~ 25312163 (+) False LOC103045999
XM_007235188.3 mRNA downstream 247220 25606787 ~ 25613446 (+) True adpgk
XM_022672426.1 mRNA downstream 247223 25606790 ~ 25613446 (+) False adpgk
XM_022672427.1 mRNA downstream 247223 25606790 ~ 25613446 (+) False adpgk
XM_022672428.1 mRNA downstream 320526 25680093 ~ 25700055 (+) True LOC103023612
XM_007231573.3 mRNA downstream 367384 25726951 ~ 25778572 (+) True dennd2a
TU103131 other upstream 59796 25294501 ~ 25296468 (+) True G76464
TU103035 other upstream 171532 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 408115 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 475323 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile