RNA id: TU103228


Basic Information

Item Value
RNA id TU103228
length 419
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G76536
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25713432 ~ 25713850 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGTCTGGGGATGACTTTAAGGttatgatgtcacttcctcctTTGATAGAGTTCATCTCATTAGCCGCCTGGGTGGCAGAGGGGCTGTGAGAGAATTTTTCCTGTCAAAATAGGTTGGAAGGCTGCCGCGACAGGTTTTCGCTCTcacattttagtacaatgttcACTCACATGTTGATCAAGGGTTGAACATATGTAAATACATGATTGGAGGAATTACGGTTTGTCGACGTATCTGTTTGATACGTCGAAAGGGGGATTGTGGGAAATCTTACGAAGAAACCTTGTTTTACCTTGAATATATTGACAAGTATCTCACAatcatgattacttatcttggtatctaaaattacataatcatcTGTGAAACCCTGTATTTtgtatgcattaaccaatacttacaccacatttgatcattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103252 lncRNA upstream 58435 25652587 ~ 25654997 (+) True G76552
TU103242 lncRNA upstream 66954 25640587 ~ 25646478 (+) True G76543
TU103237 lncRNA upstream 68297 25636971 ~ 25645135 (+) True G76541
TU103236 lncRNA upstream 69509 25636480 ~ 25643923 (+) True G76540
TU103233 lncRNA upstream 70804 25635831 ~ 25642628 (+) True G76539
TU103387 lncRNA downstream 373339 26087189 ~ 26093193 (+) True G76646
TU103397 lncRNA downstream 431775 26145625 ~ 26146752 (+) True G76655
TU103610 lncRNA downstream 857330 26571180 ~ 26571399 (+) True G76833
TU103615 lncRNA downstream 965790 26679640 ~ 26679890 (+) True G76838
XR_002650279.1 lncRNA downstream 970038 26683888 ~ 26685678 (+) True LOC111193118
XM_022672428.1 mRNA upstream 13377 25680093 ~ 25700055 (+) True LOC103023612
XM_007235188.3 mRNA upstream 99986 25606787 ~ 25613446 (+) True adpgk
XM_022672426.1 mRNA upstream 99986 25606790 ~ 25613446 (+) False adpgk
XM_022672427.1 mRNA upstream 99986 25606790 ~ 25613446 (+) False adpgk
XM_015601855.2 mRNA upstream 367385 25327566 ~ 25346047 (+) True LOC103046607
XM_007231573.3 mRNA downstream 13101 25726951 ~ 25778572 (+) True dennd2a
XM_015600835.2 mRNA downstream 82588 25796438 ~ 25830701 (+) True LOC103024360
XM_022672430.1 mRNA downstream 82596 25796446 ~ 25830701 (+) False LOC103024360
XM_022672431.1 mRNA downstream 125502 25839352 ~ 25843928 (+) True mansc4
XM_022672433.1 mRNA downstream 146679 25860529 ~ 26053114 (+) True LOC103028784
TU103131 other upstream 416964 25294501 ~ 25296468 (+) True G76464
TU103035 other upstream 528700 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 765283 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 832491 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile