RNA id: TU103252


Basic Information

Item Value
RNA id TU103252
length 1309
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G76552
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25652587 ~ 25654997 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGTAACGTCTTTACTGACATCAAAGTATCTCAATACTGGGGTGTTACTCACCAGTGACTTGAGTTTTCTGAAGCTCTCTTGCTGCTCAAAGTCCCAATGCCATGCTGTGTCACTTTCCAGCAGTTTTCTCACCGGTGCACTCACCTCTGCCAGATTCGGTATGAATTTTGCCAGATATTGCAGCATTCCCAGGAACCTCATCAGAGCTGCTTTATCTTCTGGTTCGGGCATGTCCTGTATCGCTCTGACCTTTTCTGGGTCGGGCTTCAATCCGTCTGCTGACAAGACATGTCCAACATAACTGACTTCAGTCATCCTGATCTTGCACTTAGCTCGATTCAGTTTCAGGTTGATGCTCCTGATTCTGTCTAACAGCTGTCTCAGTCGTTTGTCATGCTGCTCCATATTTTCTCCCCAAACAAGAATGTCATCAACAATGTTCACGACTCCCTCCAGGTCTTCTAGACGCTGTGCTATGCACTTTTGAAACACCTCTGGTGCGGAGGAGATACCAAAAGGTAATCTCAGGAAACGATACCTTCCAAACGGAGTGTTGAAAGTACACAGTTTGGAGCTTTTGTCATCGAGTTGCACTTGCCAGAAGCCATGGTTGGCATCAAGTACAGAGAACACTTTGGCATTAGGCATTTCCGCGACTATCTCTTCAACTGTGCGTAGTGGATAATGCTCTCGGCGTATCGCTTTGTTCAAGTCTTGTGGGTCAATACAAATCCTTAGCCTTATTTTTCAAATCAGTCACGTATGCGTCAATGGTTTCGTTTTGCCCTTGCGCTCTCGTGAAGAAGATATGTCTCAGGTAAGTTACATTCTTTCTTGGTTCACAGTATTTCTTAAAGCTTTCTTTCAGCGCCTTCAAATCCAATTCTCCCTCACCAAATTCCATTGTGTTATATACCTTCAAGGCTTCATCTCCGGCCACATGTAGAAACGTTGCACACTGCCTTTGTTCACTCTTCTCCGCCAGCCCAGATGCGATGAGATAGAGATCGAACTTTTGAATCCAACTTCTCCAGTTTTCAGCGACGTTCCCCTCGAAGCTCAGACTATTTGGAGGTTTCAGTTGCTCCATAGTTCCACTCGTTTACTTCTGACACCATGTGATAGTTTGTGGTTGTACCAGGGgtgattatattaataatacacgGAGACTGATTTCACAAGACGGGTCTCTTTACTTATGTGTGTGTCACGCACCCTTCCAACTCTGCCTCTCTTGTTCTTGGTTCGGTTACCTCACAAGGGTGCCATCAAGTGGTAAGTAACTGAACTACAACTACATACAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103242 lncRNA upstream 6109 25640587 ~ 25646478 (+) True G76543
TU103237 lncRNA upstream 7452 25636971 ~ 25645135 (+) True G76541
TU103236 lncRNA upstream 8664 25636480 ~ 25643923 (+) True G76540
TU103233 lncRNA upstream 9959 25635831 ~ 25642628 (+) True G76539
TU103218 lncRNA upstream 101276 25550845 ~ 25551311 (+) True G76526
TU103228 lncRNA downstream 58435 25713432 ~ 25713850 (+) True G76536
TU103387 lncRNA downstream 432192 26087189 ~ 26093193 (+) True G76646
TU103397 lncRNA downstream 490628 26145625 ~ 26146752 (+) True G76655
TU103610 lncRNA downstream 916183 26571180 ~ 26571399 (+) True G76833
TU103615 lncRNA downstream 1024643 26679640 ~ 26679890 (+) True G76838
XM_007235188.3 mRNA upstream 39141 25606787 ~ 25613446 (+) True adpgk
XM_022672426.1 mRNA upstream 39141 25606790 ~ 25613446 (+) False adpgk
XM_022672427.1 mRNA upstream 39141 25606790 ~ 25613446 (+) False adpgk
XM_015601855.2 mRNA upstream 306540 25327566 ~ 25346047 (+) True LOC103046607
XM_022671894.1 mRNA upstream 336272 25315000 ~ 25316315 (+) True LOC103027043
XM_022672428.1 mRNA downstream 25096 25680093 ~ 25700055 (+) True LOC103023612
XM_007231573.3 mRNA downstream 71954 25726951 ~ 25778572 (+) True dennd2a
XM_015600835.2 mRNA downstream 141441 25796438 ~ 25830701 (+) True LOC103024360
XM_022672430.1 mRNA downstream 141449 25796446 ~ 25830701 (+) False LOC103024360
XM_022672431.1 mRNA downstream 184355 25839352 ~ 25843928 (+) True mansc4
TU103131 other upstream 356119 25294501 ~ 25296468 (+) True G76464
TU103035 other upstream 467855 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 704438 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 771646 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile