RNA id: TU103387


Basic Information

Item Value
RNA id TU103387
length 5859
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G76646
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26087189 ~ 26093193 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAACAGGCTAATATATTCATGTGCAACAAGTCTGAGCCTGCACGGATTTGTCTGTACTGAGAACAGAACTTGGCTAGAAGACAGAAACAGCAGGAATGAACACAACAGCATTGTTTTGGCTTTTCTGcctgtatttttgtttgtttgtgtggaaATGTTAATGCAGTTTTACTTTTCATCCTACAGTTTCAGAGACATTTGTGAGTAGTTAGTGTATTCAATGCAACTTTAAACAATATGACACAAATTATAAACCATACAAATGACTGAGCCATGCTTTCGGGTCATGCCATGTCAAAGTAGCAAAAATCAGCTGCTGTAAATATTGGAGGTATTTTGACTTGGATTAAAGCTGGCTTTAGTTGTGTTGTCTTCATCACATAGTCTGCAACAAGATGAAACTTGAAATTAAGAAGCCTAAACTTTTTTACTAGAATAATTTTGTTGGCAAAATGTTTGGTACATCCCTTGTTTGGGCCAAATCTAAGGCATTTCTTAAAAATTACTAAGCATTAAATGATAGGTAAATGATGACACtccacaaaatatatacagctctgcaagaacacttaaaatgatgagtttctttgattttaccaaattgaaaacctctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaagctgaactgcttgaattgttgaaccaggagtggcataaagctatccaaaagcagtgtgtaagactggtggagaagaacatgccaaaatgcatgaaaactgtgattaaaaaacagggttattccaccaaatattgatttctgaactcttaaaactttatgaatgtgaacttttttctttgcattatttgaggtcttaaagatctgcatcttttttgttatttaagccatttctcattttctgcaaatacatatacatataaatagcaaaatcagaaactgattcagaaagttgATGTCTTTTCTTTCCATCTGTTTCAAATGAAAAACTACTAGTATCCTACTGTATCCCTCCAGTATCCAAGTTTTTTCACTGCATTTGACATGGAATGACTCTTAATGCAATTCCCACAAATTTCAACACAGATTTTACACAGACAAGAACATAGTTAGCATTATCAGGAGcttctgtatatatacagtatacaccaCATGATTAAGGTCCATAACTGCTGTGTTCTGAACAATCTGTGAGGcttcacacacactgacatgaatacatactgtacatttgacACAATGTGCAGCTGGAAATGCGtttaaaaatgcaGTTATGGGTACAATTGCATAAGCAGTTCAATAAATTGTGGCTAACACTTAATGTTAATTACAGGGCTTCTGATAGAGCTTTGAGAGATGCACAGTTGAACCTGCTAGCCTAAGATGAATACTCCCttaattatatattgtttaaagtaACAACTGTACAAATgtctattaaaaaaatgctgcaatTAATGTCCCAAACCCATATAAATCCAGGAGTCTGCACCAGGCCTCAACACCCAGAAGCTTAATAAACCTTAAACCCGCCTTCACAAAAATAGCATATTTTACTGCATTAAGTTTTGATTGATTTATGGCATTAAATGTATGGAATTTCAACTTTCCCCACATTTTCCTGACCTGTTATAATAATGCAGGCAAGAAGAGGCACCGTGGTTTCTGAGACAGACTGACATTGAAGAAAACcccctaatcctaatcctatTATTAGAATTTCACCCACACTTCACTTCAGTAAAGAACTATTATTGCCATTAGAAATCTACTGTGCTCTGTGCAACATGCtgatgatgtttttattttcatatgcgTAACTGATGggtgtttctctttctctctttaatcAATTTTCACTGAATCAAACTCTTGGGTTTGCCTTTAAAAGCATGTGGTGCCTAAAAACTGACTGACTAAGTACCCTCTGTGCAACACTTAAGGGTTTCTAGGCTGTACTGCGTGaggatgtttgtgtgtttgtgtttcatcCAAAGACAAGGTCAgcttttgtaatttttgtaaaGACGGCatagtctgagagagagagagccctgTGAAGGTGTGATCCAGCAAAAGCGAGAAAGGGGAATTCAGAGAGTGAAAATGACCAATAATGACATTGCGATATTTCGTTTGTCTGAGATATTTAGTGTGATCCTAGAAACGCAGGAATTTTTGACATATTTCTCCACAATTTAATGGTCCAAACAAGTCCTGATATTAACAAAGTTTTCCATGTATCCAatactggaataaaataaatattatacagcAGTAAAATCTGCCTTTGGTAGATATGCTATGGAATGATAGATATCTAAATCTGAATTTCCCTCCCtatcaaacagcaaaaaaaaatatttaagttgcacatgacattgcacgtcctgcAACTTATTCAAGGCATCCAAAGTTAATTCATCTGCCCCCCTTTGATTCTGCTCTTCTGGCAATGCACTAGATGTCAAAACagtgctgtaaggatttgattgctttcAGTCACAAGagcattgtttaaaaaactattaaatggtcacagttccactgctccacagttcaGTGCTAGTTGAGTTTATGCTCCATAGCATATCTACCACAGAAAGTGTTCATATCAGAACTTGTCTggtctgttttctttttccaacacacctgatccaactaattaGATAATTAGCTAATTATTATTGAGTCAAGGTGGATGTGTTTGAACAAGAAATGCACTAAAATGAGCAGGGCAGTTGGCCTTAAGAACCCATGATGAGAAACACTACTCTAAATCATGCTTGGCTGCTccacattattataattattataatatcattATATGATATTATTGTGATATGTTGCCCACGATATCgatatcacgatactgtgattctgcgatacttAATATATATCGCAAGACAATTCTTTAGATAATTCACTGAAGAGGATGAAATAATCCTAAAATACAGGAATCATGGATTTATTGGTGCCAGTTTCACACCAGTATTCTTCACCGCAGCTTTACCATATTTATTTGAtaagcgccaccatgtggagtaaaattggggGAGAGTGTTAGGGACTTTAGAGAGCCGATGTTtcaataaatatcttaatattcgACGCCAAGTATCGTATTGCAAATTAAACAGATACAATATATCGcagtatcaatattttgtcccacccctaatagAGACAGAGATGTTATACAAATTATACAGTCAAACTCCTGCATCCATGATTCATACAAGTTATACAGAGTGTCTGGATTCTTAAGGATTAAGCCTAATCAgagaatatatttttcttttaattaaaaatctcAAACTGCTCTGtggtccaagactaggcttaatttttttctgggaaactgccccatAATGCATTAGTAAAAATTGCCTTCTTGCCTCTGCATGGTCACAATCTGACACATTTTAGACATGCTTTGTGTAAAGGTAATGGTAGAGACGGAATATGCGTCACTATTCGATTTGCATAGATGCAAGTCCACTTCACTAGTCAGACTTGGATAAGCATTATTGTATCTAAACTGTGGGCACACTAATCTATTTCATTTAAGAATGAAGCCGGTTTGGCTAAAAACGGGACAGCAAACTGCAATTTCTGAAGCAAAgacattgtttttaattttttttttttttgcagcaagTTTTGCTTACAAAAAGGAGTGTTTTAACTTCACTATTTACGCCACGATCAATGTCCGCCTGCCACTGATGCACTGACATCTAGCAAACTTATTCTGTTTGGACCTGAGCAAACTAACGGGACGTAACTCAGCACTCTTTCTCCAAcaggtctgttttttttacaactccCAAGTGATAATCCACAAACACATTTGTTTGGCTGTTGCGTGTGGCACAAGACCTACGGTAAATGCTAAACAAGCAGGTGCATTTTATAAAACGTGAGGAATACATTGGAAGCACTGTTTAGAAAACACATCATTATAATATCCCTGTCAATTCTTTAAAAGAGTCCACTGCAGTACTtactaggggtgtaacagtacaTGTATTTATAATGAACCATCATAGTATAGAGGTCACGTGTATACAGTACCGTGTACTGAATACCGAAATATTAAATACTGTGTAAATGCAGTGGTTTCATAAGCATGTGTGCCACCCTGAAACTATATGGTATTGTGGGAACTGTAGAGGCTTAGGGGTATTGTTATAGTAACTGTAGTTTTTTGACACGGATCATCCTAACGTTTACAATTTACAGCATGATTAACGACACACTAATCGCACTAGATGGAACAAACTGTAACAAACAAAAGGGCATTTCACACCTTAAAAGTCTGAACCATAGTCTTAACCAATGCACAGAACTTTACTATGTCCTCCTGTCATCACCTACATGAGCCGAGTTTCCCTAGTGTTGATCTGAATCAAGTGCACGTTTAGTCTCCtcatatttgagctaaactgctgttcagatgctgtttaacctgattaattacccagataattaccatagctgtgaacaaacactggcactgctgctgcttcatgctaaactgttttttacacTGAATGTTGTATGTGCAGTGCTCACGCCCACTTAACTCTGCTTTCTGCAACAACTGTGTGGatgccatttgttttttttttcagtgtttttcagaaccttcttgctatatttacttcCTTGCTCCTGCATCAGACAGTTCGCATTCTGGTGCTTTTAGGTATGTGCTTGTGTGAAAGCAAACCAAACCGAGTGGGTAAAaagctccaagtaaacaaactcatcgactgatttggaccagagaaacgaactacaggtgtgaaaacgccctcaTGTTTTCTTCTTCAGTGCTGTACTTGTATTGAACCTGGAGGTCCAAACTGCGTTGTAGACTGAACCGTATCTTTTGTGTACTGTTACAGCCCTAGTACTAACCATAGGTCTACTCTGAAGTCACTTGGGTGTTCTGGAGTTCATCTATCAGATACTTTCTCTGAATGCATTCAAGTAATCAGTCTAGACTTGATGCACCACAATTCATGATTATgtcgttgtgtgtgtgtttttctgtacaCAGATCACAAAGACTACAAAAACTCTGTGTTACCCGAATACAACCttatttccatttaaaaaacatattgctGTATAGAGTTCCGACTTCCAGGCCTGTTTTCATAGTCTCTGGCTCACAATGATGTCCATGCAGGTCAAAGTGCATGTTAGAAAAGATCATAAACCACAAGTTCTTAAAAGCACAGCGACACAGTGGTCTGCTGTCCCAAATCTGACTCTTTCCAAAGCGAAATCCCTCTAAGACCTGAACATTCGAAACCTCGAAAAACAATCTTTTCTGTACAGCCAGCTGACTTGTGTCTTGTCCTGGACACCACTGTCTCCTAACTGTAACGGTTTATTAGCAACCCTTCAGACAGGGCACAGTGTGCCTTCATCAGGGACACGTTCAGGAGGCCCCTGAGAGCTTGTCCATACTTTTGTTGGAGGAACAAACGGTGCCTGTGCGTTCCCGAAAAAGCCCTCAATCATCTGGAAAAGGGCTGAACTCGATCCTTGCTCAGCATGTCCCTCGGGAGGGCCAAGTACTTAGTGGTTAGCCGCAGGAGTATCCTTTAGTACATGTCTCTATAGATCTCCTGCAGTAGGGGATGCAGTGAAGTGTCCTCAGTCTTCTTGATCTCCTGCACTAGCTGCGCATGTTCCGTGACCAGCTGCCGCAGGTCCGCTAGTTTCTGTAGCAGTTTGGGGAAGAGAAAGGCATTGTCTGGGTGGTTGTTCTGAAGGTGCAGATACAGCACATGGACGATCCTCTCCTGCATTCGTTCAATGTGAGGGACGTTCACCAGACCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103228 lncRNA upstream 373339 25713432 ~ 25713850 (+) True G76536
TU103252 lncRNA upstream 432192 25652587 ~ 25654997 (+) True G76552
TU103242 lncRNA upstream 440711 25640587 ~ 25646478 (+) True G76543
TU103237 lncRNA upstream 442054 25636971 ~ 25645135 (+) True G76541
TU103236 lncRNA upstream 443266 25636480 ~ 25643923 (+) True G76540
TU103397 lncRNA downstream 52432 26145625 ~ 26146752 (+) True G76655
TU103610 lncRNA downstream 477987 26571180 ~ 26571399 (+) True G76833
TU103615 lncRNA downstream 586447 26679640 ~ 26679890 (+) True G76838
XR_002650279.1 lncRNA downstream 590695 26683888 ~ 26685678 (+) True LOC111193118
TU103618 lncRNA downstream 590875 26684068 ~ 26685628 (+) False LOC111193118
XM_022672433.1 mRNA upstream 34075 25860529 ~ 26053114 (+) True LOC103028784
XM_022672432.1 mRNA upstream 34075 25860529 ~ 26053114 (+) False LOC103028784
XM_022672434.1 mRNA upstream 34075 25860529 ~ 26053114 (+) False LOC103028784
XM_015600831.2 mRNA upstream 34075 25860529 ~ 26053114 (+) False LOC103028784
XM_022672435.1 mRNA upstream 105742 25860529 ~ 25981447 (+) False LOC103028784
XM_007231584.3 mRNA downstream 143587 26236780 ~ 26286442 (+) True LOC103026929
XM_007231585.3 mRNA downstream 154373 26247566 ~ 26286442 (+) False LOC103026929
XM_022672440.1 mRNA downstream 382314 26475507 ~ 26484181 (+) False LOC103027718
XM_007231587.3 mRNA downstream 382393 26475586 ~ 26484181 (+) True LOC103027718
XM_022672442.1 mRNA downstream 397422 26490615 ~ 26511281 (+) False LOC103027405
TU103131 other upstream 790721 25294501 ~ 25296468 (+) True G76464
TU103035 other upstream 902457 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 1139040 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 1206248 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile