RNA id: TU103397


Basic Information

Item Value
RNA id TU103397
length 1128
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G76655
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26145625 ~ 26146752 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACACTGTTTTATTGTTGGCTTGCTATTAGAACAGAGCAGATATTCAGAACAGAACAAGTATTACAATCTGTACAGCACCtacttcttttacttttttttttttttttactgggcctgatctttatttattcctttttcATACATggcatttacaaaattaattaaagcCAAGAGATTCATACAAAAAAGAAGCAAGGGAAGACAAAATCAACGAGGATAACTGATGCACCATACATGCataaaaaatcttaattcaGCTATATTTTAATGATCCACTTAGAAGGAAAATTGTCTATTATGCAGTGCCACCTGTGGCAGCAGAGCATTAAGTGTCTTGCCTAAGGGCACAACCAAGAATTCATGTGATTTAAACACACTGTCTTCTGCTGCTACACTaaattgccaaaagtattttttgtctGCCTTTGCACACATATGAACTTGAGTGACATCCCATTCTTAATCTGTAGTCTTTATTATATTATCGACCCACCATTTTTGTAGCTATAACAGCTTTAACTCTTCTTTACACAAAGAAGAAGGCTTTTCACAaagtttaggagtgtgtttaaaaaaaaactattgcatAAAGCTCTATATGCATTGTTCTTGAGATCTAAAGGCTACATGaggtttggaggtctgtagtgactgactctgcagaaagttggtgacctCTGTGCACTATGTGTCTCAGCCCACAGCATCCGCCCAACCTCGCTGTGTAATTTTATGTGGTCTATATCTTTTTGTAACTGAGTTGTTGTAATTCCCAGTCACTTCCACTTCCACCAAGAGCAACCCATTCCTTTATTATTGTTTGAAGAAACAGTCCGCATGTCTAGGTGATCGGTTTTACACACATGTGGACATGGAAGTGATTGCAACACCCGAAATCCATGATTTAGATGGGTAAGTGAATACTtgtggcaatatagtgtatctcACCTTTCTTAACATTTAGATTACGAGCCACTTACCAGCTTCTAAAGTCAACACACAATCAGGAACTTATTCAGAACTCATATTCAGAGATGCAACAAGTGTAAAAAGTTCCTAAAATACCTTGGTGGAAAAGATGAAGGTTGGCGGTCACCCCCTGTTTGTGATTAGGTGTTGTATCGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103387 lncRNA upstream 52432 26087189 ~ 26093193 (+) True G76646
TU103228 lncRNA upstream 431775 25713432 ~ 25713850 (+) True G76536
TU103252 lncRNA upstream 490628 25652587 ~ 25654997 (+) True G76552
TU103242 lncRNA upstream 499147 25640587 ~ 25646478 (+) True G76543
TU103237 lncRNA upstream 500490 25636971 ~ 25645135 (+) True G76541
TU103610 lncRNA downstream 424428 26571180 ~ 26571399 (+) True G76833
TU103615 lncRNA downstream 532888 26679640 ~ 26679890 (+) True G76838
XR_002650279.1 lncRNA downstream 537136 26683888 ~ 26685678 (+) True LOC111193118
TU103618 lncRNA downstream 537316 26684068 ~ 26685628 (+) False LOC111193118
TU103729 lncRNA downstream 853442 27000194 ~ 27000955 (+) True G76931
XM_022672433.1 mRNA upstream 92511 25860529 ~ 26053114 (+) True LOC103028784
XM_022672432.1 mRNA upstream 92511 25860529 ~ 26053114 (+) False LOC103028784
XM_022672434.1 mRNA upstream 92511 25860529 ~ 26053114 (+) False LOC103028784
XM_015600831.2 mRNA upstream 92511 25860529 ~ 26053114 (+) False LOC103028784
XM_022672435.1 mRNA upstream 164178 25860529 ~ 25981447 (+) False LOC103028784
XM_007231584.3 mRNA downstream 90028 26236780 ~ 26286442 (+) True LOC103026929
XM_007231585.3 mRNA downstream 100814 26247566 ~ 26286442 (+) False LOC103026929
XM_022672440.1 mRNA downstream 328755 26475507 ~ 26484181 (+) False LOC103027718
XM_007231587.3 mRNA downstream 328834 26475586 ~ 26484181 (+) True LOC103027718
XM_022672442.1 mRNA downstream 343863 26490615 ~ 26511281 (+) False LOC103027405
TU103131 other upstream 849157 25294501 ~ 25296468 (+) True G76464
TU103035 other upstream 960893 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 1197476 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 1264684 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile