RNA id: TU103461


Basic Information

Item Value
RNA id TU103461
length 2195
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G76706
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26087352 ~ 26102108 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGTTCTGCCAGTGTTGGATCAGTGTGCTGCATTCTTTTACCACCAAGCCACTTCTCCAAAATATATCAGGACCATTAAATTGTGGAGAAATATGTCAAAAATTCCTGCGTTTCTAGGATCACACTAAATATCTCAGACAAACGAAATATCGCAATGTCATTATTGGTCATTTTCACTCTCTGAATTCCCCTTTCTCGCTTTTGCTGGATCACACCTTCAcagggctctctctctctcagactatGCCGTCtttacaaaaattacaaaagcTGACCTTGTCTTTGgatgaaacacaaacacacaaacatcctCACGCAGTACAGCCTAGAAACCCTTAAGTGTTGCACAGAGGGTACTTAGTCAGTCAGTTTTTAGGCACCACATGCTTTTAAAGGCAAACCCAAGAGTTTGATTCAGTGAAAATTgattaaagagagaaagagaaacaccCATCAGTTAcgcatatgaaaataaaaacatcatcaGCATGTTGCACAGAGCACAGTAGATTTCTAATGGCAATAATAGTTCTTTACTGAAGTGAAGTGTGGGTGAAATTCTAATAataggattaggattaggggGTTTTCTTCAATGTCAGTCTGTCTCAGAAACCACGGTGCCTCTTCTTGCCTGCATTATTATAACAGGTCAGGAAAATGTGGGGAAAGTTGAAATTCCATACATTTAATGCCATAAATCAATCAAAACTTAATGCAGTAAAATATGCTATTTTTGTGAAGGCGGGTTTAAGGTTTATTAAGCTTCTGGGTGTTGAGGCCTGGTGCAGACTCCTGGATTTATATGGGTTTGGGACATTAattgcagcatttttttaatagacATTTGTACAGTTGTtactttaaacaatatataattaaGGGAGTATTCATCTTAGGCTAGCAGGTTCAACTGTGCATCTCTCAAAGCTCTATCAGAAGCCCTGTAATTAACATTAAGTGTTAGCCACAATTTATTGAACTGCTTATGCAATTGTACCCATAACtgcatttaaacatgttttgtatagttaATGCATACAAATGAAATGTCTGCTGACATGCGGAGATGCCCCATTGCACttttcattttagtttaaaCGCATTTCCAGCTGCACATTGTgtcaaatgtacagtatgtattcatgtcagtgtgtgtgaagCCTCACAGATTGTTCAGAACACAGCAGTTATGGACCTTAATCATGtggtgtatactgtatatatacagaagCTCCTGATAATGCTAACTATGTTCTTGTCTGTGTAAAATCTGTGTTGAAATTTGTGGGAATTGCATTAAGAGTCATTCCATGTCAAATGCAGTGAAAAAACTTGGATACTGGAGGGATACAGTAGGATACTAGTAGTTTTTCATTTGAAACAGATGGAAAGAAAAGACATcaactttctgaatcagtttctgattttgctatttatatgtatatgtatttgcagaaaatgagaaatggcttaaataacaaaaaagatgcagatctttaagacctcaaataatgcaaagaaaaaagttcacattcataaagttttaagagttcagaaatcaatatttggtggaataaccctgttttttaatcacagttttcatgcattttggcatgttcttctccaccagtcttacacactgcttttggatagctttatgccactcctggttcaacaattcaagcagttcagcttggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaaatcaaagaaactcatcattttaagtgttcttgcagagctgtatatattttgtggaGTGTCATCATTTACCTATCATTTAATGCTTAGTAATTTTTAAGAAATGCCTTAGATTTGGCCCAAACAAGGGATGTACCAAACATTTTGCCAACAAAATTATTCTAGTAAAAAAGTTTAGGCTTCTTAATTTCAAGTTTCATCTTGTTGCAGACTATGTGATGAAGACAACACAACTAAAGCCAGCTTTAATCCAAGTCAAAATACCTCCAATATTTACAGCAGCTGATTTTTGCTACTTTGACATGGCATGACCCGAAAGCATGGCTCAGTCATTTGTATGGTTTATAATTTGTGTCATATTGTTTAAAGTTGCATTGAATACACTAACTACTCACAAATGTCTCTGAAACTGTAGGATGAAAAGTAAAACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103455 lncRNA downstream 8237 26078438 ~ 26079115 (-) True G76701
TU103428 lncRNA downstream 256655 25762522 ~ 25830697 (-) True G76676
TU103322 lncRNA downstream 373432 25713483 ~ 25713920 (-) True G76595
TU103308 lncRNA downstream 442195 25644568 ~ 25645157 (-) False G76590
XR_002650276.1 lncRNA downstream 446219 25639947 ~ 25641133 (-) True LOC111193116
TU103462 lncRNA upstream 43521 26145629 ~ 26146804 (-) True G76707
XR_002650278.1 lncRNA upstream 45040 26147148 ~ 26171101 (-) False LOC111193117
XR_002650277.1 lncRNA upstream 45040 26147148 ~ 26166516 (-) True LOC111193117
TU103483 lncRNA upstream 119918 26222026 ~ 26222578 (-) False G76727
TU103484 lncRNA upstream 119918 26222026 ~ 26222578 (-) False G76727
XM_007231580.3 mRNA downstream 2351 26079376 ~ 26085001 (-) True yars2
XM_007231581.3 mRNA downstream 9359 26073097 ~ 26077993 (-) True cdkn1b
XM_007231579.3 mRNA downstream 229830 25844617 ~ 25857522 (-) False mrps35
XM_015600836.2 mRNA downstream 229830 25844617 ~ 25857522 (-) True mrps35
XM_007235191.2 mRNA downstream 425727 25655765 ~ 25661625 (-) True adck2
XM_022672438.1 mRNA upstream 288907 26391015 ~ 26438288 (-) False LOC103029104
XM_022672437.1 mRNA upstream 288907 26391015 ~ 26438288 (-) False LOC103029104
XM_022672436.1 mRNA upstream 288907 26391015 ~ 26438288 (-) True LOC103029104
XM_022672439.1 mRNA upstream 318692 26420800 ~ 26438288 (-) False LOC103029104
XM_022672446.1 mRNA upstream 587346 26689454 ~ 26716315 (-) False LOC103035555
XR_002650273.1 other downstream 785584 25288850 ~ 25301768 (-) False rab3il1
XR_002650274.1 other downstream 785584 25289882 ~ 25301768 (-) False rab3il1
TU103036 other downstream 902883 25184209 ~ 25184469 (-) True G76424
XR_002650272.1 other downstream 1137330 24949044 ~ 24950022 (-) True LOC107197705
TU102973 other downstream 1166987 24914298 ~ 24920365 (-) True G76377
TU103672 other upstream 761306 26863414 ~ 26868817 (-) False LOC103031319

Expression Profile