RNA id: TU103615


Basic Information

Item Value
RNA id TU103615
length 251
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G76838
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26679640 ~ 26679890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgaaattgacctgtgatatcagacagatttcttttaataacagtctaaacattgtgtaaaattacataaatgttacaatttaaatggcccttattttgaaatgacacatcaaaatgttctgatattaattgagtgaaacatacaagtagtgtactatcaggactatatgaaattgacctgtgatatcagacagatttcttttaataacagtctaaacattgtgttgaaataaaatattgttataatttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103610 lncRNA upstream 108241 26571180 ~ 26571399 (+) True G76833
TU103397 lncRNA upstream 532888 26145625 ~ 26146752 (+) True G76655
TU103387 lncRNA upstream 586447 26087189 ~ 26093193 (+) True G76646
TU103228 lncRNA upstream 965790 25713432 ~ 25713850 (+) True G76536
TU103252 lncRNA upstream 1024643 25652587 ~ 25654997 (+) True G76552
XR_002650279.1 lncRNA downstream 3998 26683888 ~ 26685678 (+) True LOC111193118
TU103618 lncRNA downstream 4178 26684068 ~ 26685628 (+) False LOC111193118
TU103729 lncRNA downstream 320304 27000194 ~ 27000955 (+) True G76931
TU103740 lncRNA downstream 367695 27047585 ~ 27047821 (+) True G76939
XM_022672443.1 mRNA upstream 108925 26515189 ~ 26570715 (+) True mon2
XM_022672444.1 mRNA upstream 108925 26515189 ~ 26570715 (+) False mon2
XM_022672441.1 mRNA upstream 165619 26490616 ~ 26514021 (+) True LOC103027405
XM_022672442.1 mRNA upstream 168359 26490615 ~ 26511281 (+) False LOC103027405
XM_007231587.3 mRNA upstream 195459 26475586 ~ 26484181 (+) True LOC103027718
XM_007231189.3 mRNA downstream 211986 26891876 ~ 26958394 (+) True LOC103031630
XM_007231191.3 mRNA downstream 288746 26968636 ~ 26982403 (+) True LOC103032468
XM_007231192.3 mRNA downstream 306654 26986544 ~ 26999262 (+) True LOC103032770
TU103131 other upstream 1383172 25294501 ~ 25296468 (+) True G76464
TU103035 other upstream 1494908 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 1731491 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 1798699 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile