RNA id: TU103618



Basic Information


Item Value
RNA id TU103618
length 1423
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC111193118
representative False

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26683888 ~ 26685678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GGGCTCGCGACCTGCGGACACACGCACACGtttcctccacacacacacgtatccTACACACCCTCTCGCTCGCGGGCGCTGGTGTGGAGCGGTGAAGCGGCGCTGATGGAGGGTCTTGTCGGCTGCTGCCATGTCCTGGCTGAGGTAGTAGTTTGTGCTGTTGGTTGGGATGTGAGATTGCCCGCTATGGAGGTGACTGCGCAAGCTACTGCCTTGCCAGTGCTGGTGATCAACTTCAGCGTGGACTAAAGACACGGACTACTTCGTTATTCCAGACTGGAAACCAGAACGACCCTCAAACATCACTTGTGCCCCAGTGGTCGACGCCTCTCCTGGTCTACTAGTGAGGAAAATCAGCTGCTGATGCATcAGCTCCAGGCGGACCGGTTCAGTGTCGCTGTGAAGAGAAACCTGACCTTTCCTGCCCATTATCTGGGCGTAGCTGTGGGCAGTAGCTGCACGGCTGCAGGTGACTCATTTCTGAAGAGGTGTTTTATTAACTATGTGACTGGGAATTTGAATGAACTGGGGATTAAGCTGGAATCTGGTTGGGAATTTGAATTATGAATAGACTGGGAGTTTGGGATTTGGGGTACCTGGTTGGGAATTTAATTAAATAGGCTTTGAATTAGATTTGTAAGGGATGAAGTAATAAGATGACGATTTATCATGGATCTGGCAGTCTGGCTAGGCTGGGAATCTGGTTGGGCATTTGAATTAATATGCTGAATATTTATCAGGGATCTGGGAATCTGGTTGGGCATTTGCATTAATATGCTGAAGATTTATCAGGGAAGTTTGAATAAAAAGGCTGGGGTATGCCTAGGAGCTGGGAATCTGGCTAGGGTGGGAATTTGGCTAGAATTTTGAATTGATGAAGGTATTTGTCGGAGAATTTGAATAAATAAGATGAAGAATTCTGAGAAATCTGTTAAGGAATTTGAATCAATAGGTTGAGGGATTTGTCATGGATTTGGAAATCTGCCTAGAAATCCAAATCAATATGCTGGGGAGTTTGGctggaaattaaaataaacatgctTAAGATTCATCAGGGATGTGAAAATCTGACTCGAATTTTGAAAAAGAAGACTAAGATTTATCATGCAATTGGGAATCTAATTGTAAAGTTAAATTAGTAGGCTGGTGATTTGTTATGAATCTCAGAATATGTTTGCGATTTTGAACATTCAGTGACTAAGCTAAAGATTTGTGAGGGGGTGGCAATCTGACTagaatttttaataaatacgCTGAAAtttatcataattattattattcaaattaATAGGCAGTGGATTTATCATTGGAATGTGTTTGGGAATTTGAAGGGGGAGTTTAAGGAGTTGAAAATTAGCATTTATTAAAAGGCAGTCCGTCAGTTATGCTATGCTGTAGGCCTATAAAGTTGTAATGCCCAGTC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU103615 lncRNA upstream 4178 26679640 ~ 26679890 (+) True G76838
TU103610 lncRNA upstream 112669 26571180 ~ 26571399 (+) True G76833
TU103397 lncRNA upstream 537316 26145625 ~ 26146752 (+) True G76655
TU103387 lncRNA upstream 590875 26087189 ~ 26093193 (+) True G76646
TU103228 lncRNA upstream 970218 25713432 ~ 25713850 (+) True G76536
TU103729 lncRNA downstream 314566 27000194 ~ 27000955 (+) True G76931
TU103740 lncRNA downstream 361957 27047585 ~ 27047821 (+) True G76939
XM_022672443.1 mRNA upstream 113353 26515189 ~ 26570715 (+) True mon2
XM_022672444.1 mRNA upstream 113353 26515189 ~ 26570715 (+) False mon2
XM_022672441.1 mRNA upstream 170047 26490616 ~ 26514021 (+) True LOC103027405
XM_022672442.1 mRNA upstream 172787 26490615 ~ 26511281 (+) False LOC103027405
XM_007231587.3 mRNA upstream 199887 26475586 ~ 26484181 (+) True LOC103027718
XM_007231189.3 mRNA downstream 206248 26891876 ~ 26958394 (+) True LOC103031630
XM_007231191.3 mRNA downstream 283008 26968636 ~ 26982403 (+) True LOC103032468
XM_007231192.3 mRNA downstream 300916 26986544 ~ 26999262 (+) True LOC103032770
TU103131 other upstream 1387600 25294501 ~ 25296468 (+) True G76464
TU103035 other upstream 1499336 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 1735919 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 1803127 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile


TU103618 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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TU103618 Expression in each Bioproject

Bar chart with 7 bars.
TU103618 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048212 True 95 miRNA 0.53 1 NC_007136.7 1629655 ~ 1629749 (-)
grasscarp (Ctenopharyngodon idella) TU386992 True 345 lncRNA 0.43 1 CI01000127 745402 ~ 745746 (+)