RNA id: XR_002650279.1


Basic Information

Item Value
RNA id XR_002650279.1
length 1653
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id LOC111193118
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26683888 ~ 26685678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTGTCTAGCATTAGAGTGTAGTACACAATTGAGACGCGGCCCGCCTCTGACCGGAAGAGGGATGGGCGGGGTTCTCTTTCATTTCATTGGCTCGATCTCCGACCAATCGTtgtgtgaggagagagagtaCCCCGCTCCACAGCTACAACCGCGagcctgctgctgcttctcagcGGGATGGGCTCGCGACCTGCGGACACACGCACACGtttcctccacacacacacgtatccTACACACCCTCTCGCTCGCGGGCGCTGGTGTGGAGCGGTGAAGCGGCGCTGATGGAGGGTCTTGTCGGCTGCTGCCATGTCCTGGCTGAGGTAGTAGTTTGTGCTGTTGGTTGGGATGTGAGATTGCCCGCTATGGAGGTGACTGCGCAAGCTACTGCCTTGCCAGTGCTGGTGATCAACTTCAGCGTGGACTAAAGACACGGACTACTTCGTTATTCCAGACTGGAAACCAGAACGACCCTCAAACATCACTTGTGCCCCAGTGGTCGACGCCTCTCCTGGTCTACTAGTGAGGAAAATCAGCTGCTGATGCATcAGCTCCAGGCGGACCGGTTCAGTGTCGCTGTGAAGAGAAACCTGACCTTTCCTGCCCATTATCTGGGCGTAGCTGTGGGCAGTAGCTGCACGGCTGCAGGTGACTCATTTCTGAAGAGGTGTTTTATTAACTATGTGACTGGGAATTTGAATGAACTGGGGATTAAGCTGGAATCTGGTTGGGAATTTGAATTATGAATAGACTGGGAGTTTGGGATTTGGGGTACCTGGTTGGGAATTTAATTAAATAGGCTTTGAATTAGATTTGTAAGGGATGAAGTAATAAGATGACGATTTATCATGGATCTGGCAGTCTGGCTAGGCTGGGAATCTGGTTGGGCATTTGAATTAATATGCTGAATATTTATCAGGGATCTGGGAATCTGGTTGGGCATTTGCATTAATATGCTGAAGATTTATCAGGGAAGTTTGAATAAAAAGGCTGGGGTATGCCTAGGAGCTGGGAATCTGGCTAGGGTGGGAATTTGGCTAGAATTTTGAATTGATGAAGGTATTTGTCGGAGAATTTGAATAAATAAGATGAAGAATTCTGAGAAATCTGTTAAGGAATTTGAATCAATAGGTTGAGGGATTTGTCATGGATTTGGAAATCTGCCTAGAAATCCAAATCAATATGCTGGGGAGTTTGGctggaaattaaaataaacatgctTAAGATTCATCAGGGATGTGAAAATCTGACTCGAATTTTGAAAAAGAAGACTAAGATTTATCATGCAATTGGGAATCTAATTGTAAAGTTAAATTAGTAGGCTGGTGATTTGTTATGAATCTCAGAATATGTTTGCGATTTTGAACATTCAGTGACTAAGCTAAAGATTTGTGAGGGGGTGGCAATCTGACTagaatttttaataaatacgCTGAAAtttatcataattattattattcaaattaATAGGCAGTGGATTTATCATTGGAATGTGTTTGGGAATTTGAAGGGGGAGTTTAAGGAGTTGAAAATTAGCATTTATTAAAAGGCAGTCCGTCAGTTATGCTATGCTGTAGGCCTATAAAGTTGTAATGCCCAGTCATTTTGACAGTATGAACTACCAAATCTCTTATTAAAGATTTGCATCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103615 lncRNA upstream 3998 26679640 ~ 26679890 (+) True G76838
TU103610 lncRNA upstream 112489 26571180 ~ 26571399 (+) True G76833
TU103397 lncRNA upstream 537136 26145625 ~ 26146752 (+) True G76655
TU103387 lncRNA upstream 590695 26087189 ~ 26093193 (+) True G76646
TU103228 lncRNA upstream 970038 25713432 ~ 25713850 (+) True G76536
TU103729 lncRNA downstream 314516 27000194 ~ 27000955 (+) True G76931
TU103740 lncRNA downstream 361907 27047585 ~ 27047821 (+) True G76939
XM_022672443.1 mRNA upstream 113173 26515189 ~ 26570715 (+) True mon2
XM_022672444.1 mRNA upstream 113173 26515189 ~ 26570715 (+) False mon2
XM_022672441.1 mRNA upstream 169867 26490616 ~ 26514021 (+) True LOC103027405
XM_022672442.1 mRNA upstream 172607 26490615 ~ 26511281 (+) False LOC103027405
XM_007231587.3 mRNA upstream 199707 26475586 ~ 26484181 (+) True LOC103027718
XM_007231189.3 mRNA downstream 206198 26891876 ~ 26958394 (+) True LOC103031630
XM_007231191.3 mRNA downstream 282958 26968636 ~ 26982403 (+) True LOC103032468
XM_007231192.3 mRNA downstream 300866 26986544 ~ 26999262 (+) True LOC103032770
TU103131 other upstream 1387420 25294501 ~ 25296468 (+) True G76464
TU103035 other upstream 1499156 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 1735739 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 1802947 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile