RNA id: XM_007231188.3


Basic Information

Item Value
RNA id XM_007231188.3
length 2783
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC103031319
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 26856629 ~ 26878862 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtgtgtgtgtgagcacgcACGCTACATCACAACAGGCCACAAAACCTCAGAAGCAGTGACAGCCACTGGCTGTCTGCACAGATGCGCAGGATTTGACATCATTAATTTAAGGATTGAGAGGTTTACTCATTCAGAGCCACTGAGCACCGTATCCATGCCAACAAGATGATGTCATGGCGGTCAACATACAGAAGCTCAAAGTTTCGTAACGTGTTTGGTAAAGCTGCTGGACGAGAGGAGTGTTATGAAGGTGTTCCCATCACCAGAAATGTCCATGATAACCACTTCTGTGCTGCAAATCCTAAATTCCTTGCTATCATCACAGAAAGTTCAGGAGGAGGATCTTTTCTGGTTATACCAGTTTACAAGACTGGCAGAATAGACCCTCATCACCCCAAAGTCTGTGGTCACCAGGGCAGCGTTCTAGACATCAAATGGAGTCCGTTCAGAGACAATATCCTGGCTTCTTGTTCAGAAGACTGCACAGTGAGGATCTGGGAGATTCCTGACGGTGGCATTAGACGCAACATGACAGAGGCTCTGATGGTTCTGACTGGTCACAGCAGGAGGGTGGGGCTTATAGAGTGGCACCCCACGTGCAGTGGGATTCTCTACAGTGCTGGATATGATGGCAAGATCATTTTATGGAACTTGGAGGAGGGCAAGGCTGTGAGGATGATTGACAGCCATTCGGACGTGGTCCTCTGCATGTCTTTCAACACAGATGGAAGTCTTCTGGCAACCAGCTGTAAAGACAAAAAGCTGAGAATTATGGATGCACGCACTGGGAGGCTCCTACAGGAAGCAGACTGTAAGAGGCACAGAGTCGGCAGGGTGGTGTTTCTAGGCAACATGAAGCGTGTGCTCACAACCGGCGTGTCACAGTGGAACACCCGGCAGGTAGCACTGTGGGATCAGGAGGACCTGTCTGTGCCGATCATTGAGGAGGAGATAGACGGGCTGTCTGGACTTCTTTTCCCTTTTTACgatgcagacacacacatgctATATCTGGCAGGCAAGGGTGATGGTAATATCAGATATTATGAGGTCAGTCTAGAGAAGCCCTACCTGCAGTATCTAATGGAGTTCAGCTCTCCTGCACCACAGAAAGGACTTGGTGTGATGCCAAAGCGGGGTTTGGATGTGGGCGAATGTGAGGTGTTTCGTTTCTACAAGCTGGTGACTCTGAAAGGTCTGGTGGAGCCCATCTCAATGATAGTACCACGCAGAGCGGAGACGTTTCAGGAGGATATCTACCCAATGACCGCAGGAGCAGAGCCGGCTCTAACTGCTGAGGAGTGGCTCAGTGGAATTAACAGAGGACCAGTCCTGATATCTCTGAAGGAGACGTATAAGAGACCCAACCCAGCTGGTCCTAAAGCTgctaagagagagaggagagcaaTGGCAATGAAAGGGCTTGACCTTATAGAGAATGTCTCACCCAAGACAGACAATGagTTCCTGAAGATGTTCTACAGGCAGCAGGATGAAATTAAACGACTACAGAAAGAACTCAGCGATAAAGATGAAAGAATTAAACAGCTGGAACTAGAACTTCACAACTTGAAGAATGTGACTTATTAACCCTCTTTCACACAAATGCAAAGTAGTCTTTAAATGAACTGCAAAGGCTGCTGTTAGCAACATATGAAAGCTGAAAATTACAGCTTAATAAATtctaatttcattttatttccagATGAACATTAGACTGAAGGTGGAAAACAGTATTTTGAAAATATCTGTATGAGGTCTAACAATATGATTCTGAGCCCTAATTAATTCACTCAttagttaaaataattttaaaaaatgttttatttaaaaatatccgCTTATACTGCTGCTGTATTGACCTTCATTGTAAAGAACATAGCAATCAATACAACATGCAGCTTAGAAAGCATATGTCTGCTTCTGTTTATGAAAAGACATCTTGATCTTGAGATGAAACAGCAGGAGAAAAGCCACGTTAAAGCTGGCCTCCAGTTCAGACCTCCGACAGAAAGTCCTGACACACTGCCATGACCCAGTATGATCCTGATCCACCAACAGATGGCAGTGAGGCTACACCACTAAGTAGTTACAACAAGTCATTGActgtccaaaaagaaaaaaaaatcattgaataaaagtaaaagtaagtaaatgaaCTGTTTCTTCACTTCTGTCCTATAATAGTTGGATTTTTCCTGTCAACACATTTCCAAACACAGTTCATTTCAGCTTTTGTCATTTAATTGTGTTGTAATTCTAGTTTTTCtattacaataaaacattttaaattgttttaattaggtAATTTAATATTTCTGTGTTGTAAACATATAgtgaatatatatgttttttgttgttgagaCTGGTGCAACATTTTGTAACTGGTTGAAGTCAGAACAACAACTCTTTGAAGTCAAGTGTATCGTATTTGATACATAATTGAGGGTTGTTGATTTTTTTGGACCTCTGCAATATCATGATAACTGAATATTGCAagatattaatttaattgttattaaattatatacgaataataacaacaattatagaatattttgaataaatacATGCTGTTTATTTACATAGATAGAATAATAACATGTTTCTTCTCCACTGTATGCACCACAAATGTAAAATTACTTGAATAATCTTTTAATGTCAGCTCAGAGCTTAAAAGGTTAAAGagttttttatacagtatattctatatgttttatgttgtttaaaaGATGTGTCAAGTACTGtaagatacaaaataaaagtagtaTATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103633 lncRNA downstream 124575 26731779 ~ 26732054 (-) True G76853
TU103631 lncRNA downstream 126973 26729288 ~ 26729656 (-) True G76851
TU103614 lncRNA downstream 183241 26672997 ~ 26673388 (-) True G76837
TU103572 lncRNA downstream 342735 26498913 ~ 26513894 (-) False G76802
TU103684 lncRNA upstream 8339 26885879 ~ 26886114 (-) True G76897
XM_007231187.3 mRNA downstream 82239 26766093 ~ 26774390 (-) True avpr1a
XM_022672446.1 mRNA downstream 140314 26689454 ~ 26716315 (-) False LOC103035555
XM_022672445.1 mRNA downstream 140315 26689454 ~ 26716314 (-) True LOC103035555
XM_022672436.1 mRNA downstream 418341 26391015 ~ 26438288 (-) True LOC103029104
XM_007231190.3 mRNA upstream 80430 26957970 ~ 26966063 (-) True fem1b
XM_007231200.3 mRNA upstream 124688 27002228 ~ 27003545 (-) True LOC103035861
XR_002650273.1 other downstream 1554861 25288850 ~ 25301768 (-) False rab3il1
XR_002650274.1 other downstream 1554861 25289882 ~ 25301768 (-) False rab3il1
TU103036 other downstream 1672160 25184209 ~ 25184469 (-) True G76424
XR_002650272.1 other downstream 1906607 24949044 ~ 24950022 (-) True LOC107197705
TU102973 other downstream 1936264 24914298 ~ 24920365 (-) True G76377

Expression Profile