Fish Transcriptome and Expression Database

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ornamental fish

RNA id: TU103684

Basic Information

Item	Value
RNA id	TU103684
length	236
lncRNA type	inter_gene
GC content	0.44
exon number	1
gene id	G76897
representative	True

Chromosome Information

Item	Value
chromosome id	NC_035904.1
NCBI id	CM008307.1
chromosome length	27092187
location	26885879 ~ 26886114 (-)
genome version	Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species	mexican tetra (Astyanax mexicanus)

Sequence

ataaccctttcaataacctccaatagcctttattAGTCTTCAGTAgtcttcaacagtctaaccttacagccgtggtgtgtccactaaactccgtagttataaacatcatgaggttagcagcgcgctaactgacctgtttataatgtaatcccagcagtgactctgtgacggctgctctaaactgctgctgttagctgcttgggctgaaagatgaactgtagagagctgtattatcc

Function

GO: NA

KEGG: NA

JBrowse2

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

RNA id	RNA type	direction	distance	location	representative	gene id
TU103679	lncRNA	downstream	26408	26859037 ~ 26859471 (-)	True	G76892
TU103633	lncRNA	downstream	153825	26731779 ~ 26732054 (-)	True	G76853
TU103631	lncRNA	downstream	156223	26729288 ~ 26729656 (-)	True	G76851
TU103614	lncRNA	downstream	212491	26672997 ~ 26673388 (-)	True	G76837
TU103572	lncRNA	downstream	371985	26498913 ~ 26513894 (-)	False	G76802
XM_022672447.1	mRNA	downstream	7017	26856629 ~ 26878862 (-)	True	LOC103031319
XM_007231188.3	mRNA	downstream	8339	26856629 ~ 26877540 (-)	False	LOC103031319
XM_007231187.3	mRNA	downstream	111489	26766093 ~ 26774390 (-)	True	avpr1a
XM_022672446.1	mRNA	downstream	169564	26689454 ~ 26716315 (-)	False	LOC103035555
XM_022672445.1	mRNA	downstream	169565	26689454 ~ 26716314 (-)	True	LOC103035555
XM_007231190.3	mRNA	upstream	71856	26957970 ~ 26966063 (-)	True	fem1b
XM_007231200.3	mRNA	upstream	116114	27002228 ~ 27003545 (-)	True	LOC103035861
TU103672	other	downstream	17062	26863414 ~ 26868817 (-)	False	LOC103031319
XR_002650273.1	other	downstream	1584111	25288850 ~ 25301768 (-)	False	rab3il1
XR_002650274.1	other	downstream	1584111	25289882 ~ 25301768 (-)	False	rab3il1
TU103036	other	downstream	1701410	25184209 ~ 25184469 (-)	True	G76424
XR_002650272.1	other	downstream	1935857	24949044 ~ 24950022 (-)	True	LOC107197705

Expression Profile