RNA id: TU94981


Basic Information

Item Value
RNA id TU94981
length 321
RNA type TUCP
GC content 0.64
exon number 2
gene id G70385
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 1005483 ~ 1005838 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGATGAAGCGGCTGAGGGTGATGAAGTCGGAGGAGCTGTCGAAGAGCCCGTGCACTATGATGACCGGTCTGTGGGAGAGAACAACCGCGGCCAGCAGGCAGGAGGCGAGCAGGCAGACCAGCAGCCCCGTCTCCCTCATCTCTCCTCCGGGTACGATCCGCTACCAGCCCCGCTATCAGCCCGGGATCAGGAGCGGGCAGACCTGGTCAGGGTGTGCAGCAGGCGGGTTAGCGgacagtccagctgctccagatGTGTATCACCCCgccgctgccgctgctgctgctgctctctaGGAACCTGATTTCCCTGTGGATCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94968 lncRNA upstream 19632 984745 ~ 985851 (+) True G70379
TU94959 lncRNA upstream 25271 978563 ~ 980212 (+) False G70374
TU94958 lncRNA upstream 31206 972890 ~ 974277 (+) True G70373
TU94957 lncRNA upstream 48085 950907 ~ 957398 (+) True G70372
TU94947 lncRNA upstream 67863 863521 ~ 937620 (+) True G70366
TU95003 lncRNA downstream 82972 1088810 ~ 1090172 (+) False G70405
TU95004 lncRNA downstream 82972 1088810 ~ 1123221 (+) False G70405
TU95005 lncRNA downstream 82972 1088810 ~ 1090172 (+) True G70405
TU95015 lncRNA downstream 103821 1109659 ~ 1111771 (+) True G70413
TU95018 lncRNA downstream 110402 1116240 ~ 1117604 (+) True G70416
XM_007239718.3 mRNA upstream 32640 957420 ~ 972843 (+) True LOC103041625
XM_022671941.1 mRNA upstream 92961 899894 ~ 912522 (+) True LOC103041930
XM_007239720.3 mRNA upstream 128079 867909 ~ 877404 (+) True LOC103042240
XM_022671940.1 mRNA upstream 151428 845025 ~ 854055 (+) False LOC111193067
XM_007239721.3 mRNA upstream 167754 805950 ~ 837729 (+) False LOC103042548
XM_007257743.3 mRNA downstream 1083082 2088920 ~ 2098019 (+) True lrrtm2
XM_022671900.1 mRNA downstream 1684900 2690738 ~ 2701134 (+) True gpx3
XM_022671953.1 mRNA downstream 1822571 2828409 ~ 2854104 (+) True LOC103025734
XM_022671954.1 mRNA downstream 1822571 2828409 ~ 2854104 (+) False LOC103025734
XM_007257738.3 mRNA downstream 1852057 2857895 ~ 2866216 (+) True LOC103021672
TU94937 other upstream 150325 845052 ~ 855158 (+) True LOC111193067
TU94935 other upstream 165269 794712 ~ 840214 (+) False LOC103042548
TU94933 other upstream 165269 805956 ~ 840214 (+) True LOC103042548
TU94834 other upstream 685825 317331 ~ 319658 (+) True LOC111193042
TU95147 other downstream 262929 1268767 ~ 1269404 (+) True G70522
TU95246 other downstream 1353045 2358883 ~ 2359229 (+) True G70604
TU95561 other downstream 2371846 3377684 ~ 3378610 (+) True G70846
TU95569 other downstream 2406613 3412451 ~ 3574758 (+) False LOC111193071
LOC111193076 other downstream 3950441 4956279 ~ 4957026 (+) True LOC111193076

Expression Profile