RNA id: TU95073


Basic Information

Item Value
RNA id TU95073
length 776
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G70457
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 845038 ~ 853605 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgaaacatttattacactctataactgtagggggagcccacgagcacaaaatctcaatcctacctagtggagctttaatgttatttgattatttgagtTGTGTTTATGTTGTATTAATTTTAGTAAACAGTGTAGATACAttgtttaaggttttttttttatgtaatatttgaaATATTAGTCATATAACAGCAGATTATGTAGGAAATTGGAAATTTGAAAGgaatttaaattgtttaatagATGGAATTGCTCCAGACCAGGGCGAGCAGGGCGGTGCTCAGAGCCACGGGCAGAGACAGCTGCATGTAGGGGGCGCCGCTGAGCAGGACGGGGTTACACTTGTCCGTGTTGCAGCAGGTTTGAGAGATGGTGTAAGTGGCGCCCAGGATGGTGCCGTTAATGGTGGCGTTACACTGAGTAGAGTCGAGGCATCCCTGAGAATTGAAGCCAGAGAAACCGCTGATCGCCGGGAACTTGGCTCTTCCAGTGAAGCAGCTGGAGGAGTTGGAGCTGCAGACGCTGGATGATGGATTCAGACAGATTCCTACCAGTCCCACTGAGCACGTATTACAGGTCAGAGACTCCGCCAGAGCGAAGAATCCGATAACTGCGACCACTCCGATGATAGCTCTTCTCATCCTGAAGCCTTTAGTAAAAGTAtataatgaaagaaaataagGTTTAGAGGAACACAGGGTCTCTGGGCAGCTGCTTGATGAGATGCAGAGCCAGAATGAGCGTCTGAGTCAGGATCCTGCAGATATATGCTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95070 lncRNA downstream 4884 836229 ~ 840154 (-) True G70455
TU95068 lncRNA downstream 16482 826913 ~ 828556 (-) True G70454
TU95049 lncRNA downstream 63345 780327 ~ 781693 (-) True G70443
TU95050 lncRNA downstream 63345 780327 ~ 781693 (-) False G70443
TU95063 lncRNA downstream 64863 779362 ~ 780175 (-) True G70450
TU95096 lncRNA upstream 59473 913078 ~ 914249 (-) True G70477
TU95109 lncRNA upstream 167130 1020735 ~ 1020992 (-) True G70489
TU95110 lncRNA upstream 179284 1032889 ~ 1035006 (-) False LOC103042850
TU95122 lncRNA upstream 234238 1087843 ~ 1088144 (-) True G70502
TU95132 lncRNA upstream 262322 1115927 ~ 1117269 (-) True G70508
XM_022671930.1 mRNA downstream 648755 178319 ~ 196283 (-) True LOC103044579
XM_022671888.1 mRNA upstream 78412 932017 ~ 938184 (-) True LOC111193040
XM_015603201.2 mRNA upstream 121490 975095 ~ 982603 (-) True rps5
XM_015603200.2 mRNA upstream 121490 975095 ~ 982581 (-) False rps5
XM_022671898.1 mRNA upstream 134841 988446 ~ 1005877 (-) True LOC103041113
XM_022671899.1 mRNA upstream 156281 1009886 ~ 1035016 (-) True LOC103042850
TU95334 other upstream 1882263 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 2494195 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 2915556 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 3558343 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 4028565 4882170 ~ 4884488 (-) True G71235

Expression Profile