RNA id: XM_022671899.1


Basic Information

Item Value
RNA id XM_022671899.1
length 2874
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC103042850
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 1009886 ~ 1035016 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCGCGCTGCCTCTGCTCACTTCTGCTGTAAACTTCTGTAAACTGGTGCAACGCGTGGCTGCTGGTTCCGCGCGGGATATTCTCGGGACTGCATGACGCTGCTGCCCCCCCAACTCCCCCCCTCCTGCACCCCTGCCTGAACGGGACCCTCAGCTGGCCCACCTGAACCTCGGATAGCCCTCACCTGAGCCCGGGGACATGATTTTAGACAAGCTGGCGCGAGCCTACCTCGCCCTGCGCTCCACGGCGTTGGTGAGGCAGGCCCACTCCTCTTTCtcctaTACTCCAATGTGGCGTAACGAATCAATATCGGACTGGTGGGTGCAGTGGGCATATCTGGAGAGTCGTCAGCCGTTAGCGGTTCACTCCAACCCGGCGATCTCCCTGCCCCGCCGAGACTTCACCGACTGGAGGGGGCAGCTAGTGTTTGCAGCGAAGCTGATCGCCGCAGTGCTGGACTTCAGGGCCAGAGTGGACAGtgGGGGTCTGCCAGTAGAGTATATGAGGGGCAGGCCGTTGTGTATGGAGTTATATCCTCGGCTCTTCTCCTCCTGCCGGATTCCTGGACCTAAACATGATAATGTGGTCCATTATGGCCGGCCCCGTCGTGGCCCCACCCACATCACCGTCGTCCGCAACTACCAGttcttTCAGTTGGATGTGTATAACAGTGACGGGACTCCGCTGACTCAGAGTCAGATTCACGCTCAGCTGTGTCGTATTCGCTCTCAGTCCTGGAAGACTGATAAAGAGCCGATGGGGATCCTGACCAGCGAACACCGCCACACCTGGGGCCAGGCCTACAACCGCCTGCTGCAAGACAGGATTAATAAAGACTCAGTGAGGCTGATAGAGAAAGGCCTCTTCACGCTGTGCCTCGACTCTCCAGTTATGAGAATCTCGGACGAAAAGTATGCAAGCCGTATGGCTGCTCagattctgcatggaggaggaACTTATTCCAACAGTGGGAACCGCTGGTTTGATAAAACGTTACAGtttGTGGTGGGTGAGGACGGTTCGTGGGGTCTCCTGTATGAACAGGCCACGGCTGAAGGACCTCCTATTGCCACACTGCTGGACCACATTCTGCAGTtctgtaaAAAGCCTGATACGGTGAGAGCTCCTCTGGTTCCTCTGCCGATGCCAAAGAAGCTCTACTTCTACATCGACCCAGCGATTAAATGGGACATAGAGATGGCCAAACAGAATCTGGACATCCTCATCAATGACCTGGACATCACCTGCTTCAACTTTCAGCGCTTTGGCAAAGAGTTCCCCAAGAAGCTCCGCTTCAGCCCCAACTCCTTCATCCAGATGGCCATCCAGCTGGCTTACTACCGAGAACACAGTGAGGTGTGTGCAGCGTGCGACATCGCCTCTCTCAGGATGTTTCGGGGAGGACGCACCGACTACATCCGCTCACCGACCAATCAGATGCTGAGCTTTATTCAGGCCTTTGACAACCCCGCTGTCTCTAGAGAGGCCAAGATTGAGCTGCTGCGAGAGGCTGTGGAGGCTTACAGTCAGCTCACAGATCAGGCTCTTCATGGGCAGGGTATAGATCGCCACCTGCTGGGCCTGAAGCTGCAGGCTATAGAGGAGGGACTGAGCATTCCCAGGATGTTCATGGACACGGCGTATGGACTGGCCACGCACTGGAAACTCCGAACAGGACAGGTCCCCACCAATACGGACAGCGTGATGTGTTTCGGACCCCTGGTTCCGGACGGCTACGCGGTGTGCTACAACCCTCAGCCGGACCATGTCCACTTCTCCGTCACGGCCTTCAACTGCTGCGAGGACACCAACGCCGAGAAGCTGGCCGTCACGCTGGAGAGCACCCTGCAGGACCTTCAGGACTTACTGCAGCCTGCTGTGTAGCGCTGCTCTGATCTCGTCTCTGACTGATCTCGTATCTGCAGAGCTTAATGAACCTGTAAAACCTCTCTGAGAGCCTCCTTATCGCTTCATCTCGTCTCCAGGACCTTCAGGAGCACTCCACCTCATGGAGAGTGGTCTGGAGTATAAAAAGAAACGGCGTCCATCCAGCACCAGCCTGTATTATCCTCTGTGTTAGAGGCTTTTGGAGTGATATATAATAAGAGCTCAGGAGTGAAACtcctttattttgttaaaaacacgataaataatgataataagcATTATAAAATGGgaaggaaataataaaaaaataaagcaaacccaaaaaataatgataatttcCCATTTAAACTTGAAAATTATAGCTTAAAGTAGGAAAAGGACACAATTTGTCTGTGCCCAGTTCCCTTTTTACTTATATCTTTACATATATCTTCATCTAAATCTGGAATATATCCAGTAAGATGCAGAACAGCTTGGAATAAGCCCTAGATATGACTTTTTCCTTAGTTCTTCATGTCTTCTtcacattatttttgttttcttgaagAGAAGCATCAGACACTAGCCAAAAGCCATGCTTCTGTGTTAAAGACacagtaaataatgaataataagtataaaaaacaagaattaaataataaaaaataaagtaaagctgAAAAATATTGATCATTTCTCATTGAAACTTGAACATTGTAGCTATAAGTAGGAAAGTGGCAATTTGTTGGTGCCCAGTTGTTGGAAACTTGGCAAATTCCTTTTTTACTTCTTATACCTTCATTTAAATCTGGAATTTATCCAGTAACATGCAGAACAGCTTGAAATATGCCCTAGATATGACATTTGTCTTCttattatttgtgttttctTGAATAGAATCTTCTCCATATTGGCTTGTGTTGTATTAAAAGGGCTCTGGAGTGCAAAAAGAAGCACCAGACACTAGCCAAAAACAATGCTTCTGTGTTAAAGATGCaataaataat

Function

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95096 lncRNA downstream 95637 913078 ~ 914249 (-) True G70477
TU95073 lncRNA downstream 156281 845038 ~ 853605 (-) True G70457
TU95070 lncRNA downstream 169732 836229 ~ 840154 (-) True G70455
TU95068 lncRNA downstream 181330 826913 ~ 828556 (-) True G70454
TU95050 lncRNA downstream 228193 780327 ~ 781693 (-) False G70443
TU95122 lncRNA upstream 52827 1087843 ~ 1088144 (-) True G70502
TU95132 lncRNA upstream 80911 1115927 ~ 1117269 (-) True G70508
TU95137 lncRNA upstream 110767 1145783 ~ 1146014 (-) True G70512
TU95140 lncRNA upstream 129187 1164203 ~ 1164470 (-) True G70515
TU95146 lncRNA upstream 232952 1267968 ~ 1268442 (-) True G70521
XM_022671898.1 mRNA downstream 4009 988446 ~ 1005877 (-) True LOC103041113
XM_015603201.2 mRNA downstream 27283 975095 ~ 982603 (-) True rps5
XM_015603200.2 mRNA downstream 27305 975095 ~ 982581 (-) False rps5
XM_022671888.1 mRNA downstream 71702 932017 ~ 938184 (-) True LOC111193040
XM_022671930.1 mRNA downstream 813603 178319 ~ 196283 (-) True LOC103044579
XM_022671943.1 mRNA upstream 963140 1998156 ~ 2220364 (-) True LOC103026956
XM_022671944.1 mRNA upstream 1400664 2435680 ~ 2488996 (-) True LOC103026657
XM_022671945.1 mRNA upstream 1465972 2500988 ~ 2535981 (-) True LOC103022920
XM_007257740.3 mRNA upstream 1626495 2661511 ~ 2678905 (-) False dctn4
XM_007257739.3 mRNA upstream 1626495 2661511 ~ 2678905 (-) True dctn4
TU95334 other upstream 1700852 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 2312784 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 2734145 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 3376932 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 3847154 4882170 ~ 4884488 (-) True G71235

Expression Profile