RNA id: TU95153


Basic Information

Item Value
RNA id TU95153
length 321
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G70528
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 1297709 ~ 1298029 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctcgcatcaaattcaaaactcttacaatcgcctacaaggtgatgtcagaacaggctccttcctacctgcactcgctcctgaaggcttacgctacctcccggccgctgcgctcctccaatgaacgtcgcctcgctttgccaaacattcacacaaagcaatccagactgttctcatacagagttccccaatggtggaacaaactaccttctactaccagatcaggagaatctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactctcttaacacctctaactaactaccttctactaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95151 lncRNA downstream 8589 1288873 ~ 1289120 (-) True G70526
TU95146 lncRNA downstream 29267 1267968 ~ 1268442 (-) True G70521
TU95140 lncRNA downstream 133239 1164203 ~ 1164470 (-) True G70515
TU95137 lncRNA downstream 151695 1145783 ~ 1146014 (-) True G70512
TU95132 lncRNA downstream 180440 1115927 ~ 1117269 (-) True G70508
TU95206 lncRNA upstream 756707 2054736 ~ 2097968 (-) True G70572
TU95208 lncRNA upstream 886565 2184594 ~ 2185975 (-) True G70574
TU95212 lncRNA upstream 932462 2230491 ~ 2230944 (-) True G70578
TU95213 lncRNA upstream 939270 2237299 ~ 2237515 (-) True G70579
TU95238 lncRNA upstream 1013256 2311285 ~ 2346852 (-) True G70597
XM_022671899.1 mRNA downstream 262693 1009886 ~ 1035016 (-) True LOC103042850
XM_022671898.1 mRNA downstream 291832 988446 ~ 1005877 (-) True LOC103041113
XM_015603201.2 mRNA downstream 315106 975095 ~ 982603 (-) True rps5
XM_015603200.2 mRNA downstream 315128 975095 ~ 982581 (-) False rps5
XM_022671888.1 mRNA downstream 359525 932017 ~ 938184 (-) True LOC111193040
XM_022671943.1 mRNA upstream 700127 1998156 ~ 2220364 (-) True LOC103026956
XM_022671944.1 mRNA upstream 1137651 2435680 ~ 2488996 (-) True LOC103026657
XM_022671945.1 mRNA upstream 1202959 2500988 ~ 2535981 (-) True LOC103022920
XM_007257740.3 mRNA upstream 1363482 2661511 ~ 2678905 (-) False dctn4
XM_007257739.3 mRNA upstream 1363482 2661511 ~ 2678905 (-) True dctn4
TU95334 other upstream 1437839 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 2049771 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 2471132 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 3113919 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 3584141 4882170 ~ 4884488 (-) True G71235

Expression Profile