RNA id: XM_007257743.3


Basic Information

Item Value
RNA id XM_007257743.3
length 8296
RNA type mRNA
GC content 0.44
exon number 2
gene id lrrtm2
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2088920 ~ 2193559 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agagggagagagagagagagagaaacagcaccGATGATCGACGCCAGTCTGCCACCACTCTGTAGCAGCGAGAGGGTGCAACAAAAGCACAGAACGACGTCTCAGCTTCTCTGCTCTCCGGTCCCCCTGCATCTCTCCTCCTCCGCGCCGACAACTCCGTACACGGTGCTTCCCAGACGCAGCGGGCTGGCGACGCGAGAGGGGGGCTTCTGCCTGACATCAACAAGTTAGGGTTGAAGGACCACAAGCCGTGAAAAGAAGGAATGTTTGCTCTTCAATTAAGCAAGTGAGCTGACGACATTGCAGTGGAAAAAGAAGGGGAAGGAGGAAAAAACGAGGGGGGGGGGTCGTGCCGTTCGCCAGGCTGTTCGCTTTGGATGCAAATCGTCAACTTCTAAAAGATTAAGGATTCCTGGAAGTGAGAAAATGCCTGTTCTTTACTAATTTGAGGAATTGAACCAAATCGGAGGAGGAACGGATTAAAGCAtttacgataaaaaaaaaagggatggACAAAACCCAACATCCCGTGACATGGAATTTCTGAATTTGTTTCAGATGAGGGGGCTCGGCATTGCTTTAGTTCTGAAGACCTTGATTCCTTTTGTATTTGCTCAAAAGGCTCTTTCCCCTTTGGATTTCTTCTCTTCCATCTGGCTGTTCCAGGAGTCTGAGCAAAAAGACAGTTGAATGCAGCCGCCGATGTTCACAAAAGAATGGGTTTCCATTCAAGGTGGCCATTGGTGGGACAAGCACCAGCGGCACTTTGTGTGATCAGCATGCTACTGTGCCTGCCTCCCGCGTCATGCACAGCCTGCCCTCAGAAATGCCGCTGCGAGGACCTGCAGTTTTACTGCGACACGCAGGGGCTCCTGGCGCCCCCAGATGGCGTGGACAAAGGGGCCCTGGGGCTCTCGCTCCGGCACAACAGCATCAATGAGCTGAGCCCGGACCAGTTCTTCGGCTTCACCCAGCTAACTTGGCTCCACCTGGACCACAACCAAATACTCACCGTGCATGAGGACGCCTTCCAGGGGCTCTACAAGCTCAAGGACCTGAACCTGAGCTCCAATCGCATCACCAAGCTGCCCAACACAACCTTCATCCACCTCATCAACCTCCAAATCTTGGACCTGTCCTTCAACCAGATGACCGCGCTGGAGCCAGAGCTCTTCCACGGGCTCCGGAAGCTACAGATCCTTCACCTGAGGTCCAACTTCCTGAGGACCACGCCTGTGAGGGCCTTCTGGGACTGCCGGAGCCTCGAGTATCTGGGCCTGAGCAACAACCGGCTTCGGAGTCTGGCGCGGAACGGGTTCGCCGGGCTCATAAAGCTGCGGGAACTCCATCTGGAACACAACCACTTGACAAAGATCAACTTGGCCCACTTCCCGCGCCTGGTCGCTCTCCAGTTTCTCTATCTTCAGTGGAACAAGATCAACAACTTGACGTGCACCATGGAGTGGCAATGGACCACTCTGGAGAAACTGGATCTCACCGGGAACGAAATACGCTCGCTGACGACCGACGTGTTTGAAACGCTGCCAAATCTTAAGGTTCTGCTGCTGGATAACAATAAACTGACCAGCCTCGACACCCAAACGATGGATATGTGGAAGTCCCTGAGCATCATCGGGTTGTCCAGCAACCTTTGGGAATGTACCAAAAGGATCTGCACCTTGGCCACTTGGCTAAGTAAGTTTAAAGGTCGATGGGAGCATTCGATCCTGTGTCACAGCCCAGAGTACACGCAGGGCGAGGAAATACTGGATGCTGTTTATGGATTCCAGCTGTGTCAAAACTTTTCGGCGCCAGTTGTCCTGACCAGCACCACGACGGAGGCCACGTTGCCCCAAGAGTTCACTAGCTCCTTGTTTGGGAATATGCAGACGCCAACGCAGGACTTCTATGCAGAGGATTTTGGGAGCTTTACTATTGTCACgactactaccaccaccacccagaCCCCACGTACCGCCCTGGCTACCACCACCACGGTGGAAGGGGCGGATGTTACCGAGGACTACGCCATGATTGACAACACAGTGCTGACCCAGAGAGTCATCATAGGTACTATGGCCCTtttgttttccttctttctcaTCATTTTTGTAGTGTACATCTCACGGAAGTGCTGCCCTCCCACTCTGCGACGAATCCGCCATTGCTCAGCCATTCAGAACCGCCGGCAGATGAGGACCCAGCAGAGGCAGCCAATGACGGACCTGGCGACACAGGTGCCCTATAACGAGTACGAGCCGAGTCACGAGGAGGGGGCACTCGTGATCATAAACGGCTACGGGCAGTGCAAGTGTCAGCAACTGCCTTACAAAGAGTGTGAAGTATAAACACTATTTATTCCTGCAGTTTTTGGGTTTACCATTTTAACCATTTCAAACGATACAGGGTTTGTTTTTGGACTCAtttttagtttgtaaagaaaggggagaaaaaaaaacaaacaaacattatttCTACTCGCTAGCTTTGAAAGTCAATGGGGAAACCTGGAGGTCACAGGgatggaaatacagagagaatagatatatagagaaattcacaagtttatttttgtaatacgAAAGCAAGGTTCATATCAAGCTGGGGCAATCAATCTCAGATGAAGGTGGTATTTGTGAGATTTGTCACTGCATTATTAGTCACGTAGAGAGCAGCACAGAAGCAGCAgaagagaggggaagagaaaaACCTATAGCCAAATTGCCTGGATACTTGTGCTCCAGAAAATGACGGTTTATAAAATGATCTTCTCAATCTGAAGGTGAAATTTTATCAAGTGGATTAAAGTGCTGTTTTAAATGGTGTGTAGAAAAGAAACATCTGACGTGCCAAAAGGGGAAATGATGTGTGGTGCACATTAGACACTATAGATCACACCCACTCACTTTTGGGAAAATGATCATGGCTTCATGGTTGgttacaaaaaagtttttttttttttgttttttttttttaaaagtcacCTTTTTGTAACAAAACAATTACAGGGAGAGTACTGTTAAATTATTCCATACATAAAGAGTTAGGTGATGAACTGTTTAAAGAGGGGATTCTTCAGCCATCTCCATCTTTTCTTCCTTAAAATGTCTACCATGATCCTTTTTGTTTGTGCAAACTACCAAGGTACAGCATCAATGTGAACTTAAAGAGACGGAGAGCAGAGCAGCCTTCCTGTTTTTCGGTTTAATTCAATAAATGACACACGGTTCTTTGAAAGCTGAGAAGCTGGCCACTGTGTGCGGAAAGGTTAATGTTCAATCTGACTCGTTACATTTGCTTTACATTTGCCAAGTGTCTGGATTGCTCCCTTGACAATGACGTTGGAAGGGATTTAATAAATGTTACGCACAGACATTCGCTTACTTGATCTTTGAGCGTACACATGTTCATTCATTTCTTATTTCCAGCAGAGAGGAAGCGAGAgatagagggaaaaaaaaaatgacgaTGGCTTGGAGGTAAATACTCCAGCCCTTCAACGACATACTCACTGTGACGGTTTGCTGCTGCTTTGACCACTGCGTCATAAATGACGTTAGGAGGAGATCAACAACAACTTATAGTAGAGGACAATTAAATGCAATCACCAAACAGAGAGATTAAAGTAACAGACAGAGACTTTCGTGCAAGAGAGGATAAAAGGGAAAATGAGCAAGAGGAGGGGATAAAACAAGTGATAGAACACTAGAATCACTAGTCCAAAGAAATCAAATTCATACTGGCTCTACAACAGCCTTGCTCAATGCCTCGGAGAGTGTAATCACACCTGACAGCTTGAAGATTGAGCCAATTAGAGCCGGGCAGAAGGAATCTAATATTCTGTCACCTACATCACTGCTCCAAAAAGAAAGATTTAGACCGGGTGGACATTTAGCAGGAGCACTTACAAAGGTTCAGTCGGAGGACGCACTTGCACTCGTCTTCCGAGACAAGGGAAAGGAAGGACAGGAGAGAAGGGAGGATGGGAGgggaaaaggaaaaggaaaaagacaGAGCACTTTTATTGACATTCCTGATGCAGGATGGCTGAACGGCGGAGGAGGTTCTTTATCTTAGGCATATTACTGGCACGACGTGACAGCGTGGCAGGGAGATGAATGGGTTAGACAGATGAATGAGTGAGGGAGAAGGCGCGAGAGAAGGCGCGAGAGACttagaaagagggaaagagagaaagtgaagagTTGCGAGGCTCCTGGGAGAGCGTATAGTCTGAAGTCTTTCCACTAAACCAACAGGAGGGGGAGATGGGGGAGGGCTGGGTCAGGACACATTTGTATGCAGCAGGGAGAGGATGTGCATTAGCATCAGACTGCTGAAGAAGCCGGCACAGCGGTCGGTGGTAGCAGGAGCAGCTCGCTGCGTTTCATTTATAAGCTCGGAGGACAAGGAAAGGGAAAAAGCGTGGTAGGGAGGGGTTTGAGCTGAGCCAAGTCTAACTAATGTCTAACCTTCGCCGAGGATGAGGATCTGAAAATCTGCAGTAGAGTGACATTGTGTAAGGGCATGCACAGGGGGAGGAGAGGGggtggaataaaaaaaagacgaCAGCTATGATTATGATGAGAATATGAGATAACACATAACAGTAAGTGACGACACTTTAGGCGCAAGACCTGATCTAATCGACAGCGGAGTCACAGACAAGGCTGATCATCCAGGACCGGAAAAGAACCTGTAACCCGTTAATAGCCCAGtggttttaaaactaataaagcAAAAGGAAGGTGGTAAAGCTAGATGCTAGTTACGCTAGTCACGCTAGTTACACATCACATCAAAACTGAGGCAAAGGATTTGAGTGGCgtgcccagaaaaaaaaaataaataaaatcttctGAGGCTCTGCTGCTCATATCTGAGGTATTTTTGGCAGAACTTAAAATAGAGAAAGCATTACAGCTAACGTGCCGTGAGGAGTgaagagtgagggagggagtaaTTACCCACCACAGCACAGACTGCCGAGAGGGAGTCTGATTGGTGGGCTGAAGGAAGAGAAGAACAgcccactagagggcagtgtgAGGGGATTATTGCATTTTGCAAGATATAAGAAATGAAACGAGATTGGTAGTTGTTTGATTCAATTGTTACATTTCTATGTAGATTTGATGCAATACTTTCTagaaaaaaatggcaaatttaTGGCTTCAGTGTGGTTTGCAGACTACAGCCAGAGGGGATTGCCTGTTtgacatcagcagccagagtcagagataGTATTAATGGGTTTTAAGCAGATACCCTGTCACTCTCACTCGCTGGGGATGCTGTAATGCTGGTGgacacaggcatctgttggctgtTGTATTATAGCTGGGATGTGGCGCTTTCCTCCAGGAATGTTTGCCACCTAATAACGCTGTATTACTAGGGGCAGCttggaaaaaaatcttcgaGTTTTAAAGAGCATTAGCATTGCTGTTTGAAGTGGGTGGGTTAAATGGCTCGGCTCAACTAGAATGATTGGggcaaaacaaatatattttctcaaaatttaccaaaaaagggacttttttttaataagaataagaCTTTCTTAATGCTCAAATGTAAGATTTGAGTCCAATTCCTTCTGCggcattttaaaaaatctgtacGAAAGTGAAGAGCCACAAAAATTAAGATGCAAGGTTTTGCAAGTCAAATTAAGAAAGTGTTATGCATCGTAATTATATAGAAATGTAACAACCATCTCCACCTCAGACCCTTACCAACCATAAGtcaatttaaagaaagaaatgacaAGACAATTCACCCTTATTCTAAAGCAGAATTACATGAACCATGTTAAAAGGCCATTAAGTCAATGTGTAGCCTAACCTTTTCCAGAAACTTAATGATTTTTTGCAACATCTACATACAAAAAGCCCACACACATCAATGATAGAGTCAATAGGTGGTGAAAGCTAGGCCGGAAACATACTTCACATAATATAGCAAACGCAGATGCTTCAAGCTACAAAGACTGGGATTCCCACGCAATTtcgttaaaaatatatatgtagcaACCCATTTCATAATGCACTACTTTTGCAAGCTCCATTCTGGGGCTCTATCAGCAACAAAGTTGATACGCTTTTTCCAGGGGAAACGTCATGGCGGTAATCGCACCCAGTTTACAGACAATACAACTGGTGCTCTATCGCCCTCTTAAGCTCTGAGAATTCGAACACCGAAAACAGTGCAAGAACAGACGTTAATTCTGTATAACTGCATCTTGTGTTGCCTCAAGCAACACTACAGTGACATCCAAGTTGTGTTGTAGCACTGACTACATGCTTTTCGTCCAGTAAACAGCTATGGCTGCAATCCCATCCATTTACAGATGCTGTGATTTGCTCCTCAAACTGTCCTCTTACAAACCgatcattttaaaatgccaAAGTACTGTAAAAAACCCAAATGTTCAATTTACACAGCAGAATTTAAAGCACTGACGCAAAATGCAATGCATTTTTCGGGTTTCCTGTTGCTTTACAAAAGCTGTGATTAGAAAAGTAACAAACttttctaaatcacagcttttgTGACATTTTGTCTTTTAGTGCTGGCAATGTGCTTTTTCCAGCCAACAGTCACTCATCGCTCTATATTTGGTGTTTTAAGCACCAAAGTGATGTACAAACGGACATCAAGCATTGCGGCAAGCAGCGATAAAGTAACAATCAAGTTGCTAGTATTTTGGAGTTGACAACAAGATTAGCCCAGAGTCTACAAAACTAATGATTCTGTATTTCAGTGAACCACTGGATCTGTGTTCCCCCCCAATCAACAGTCATAGCGTTTAACCCATCCTGCTAACAGATACGATTTGTGGTCTACTGCCTCTTTCCCTTAAGTACTGAGTGTTTTAAACGTCaaagtaatataaaaacacGTACATTTTGTACAGCAGCATTAAAAGCATAGCTGCAAACAGTACTACAGTGACAGGTAATTGCTGCTTTAAGACATTTGAAATTTCCTCCTAAAACTACAGTACCTAAAACATTTGTTAATTTTGTCTTATAGTGCTGGCGATGTGCTTTTTCCAATCAACAGTCATGGAAGTTGTCCTCTATGGCCCTCAATTTGGTGTTTTAAGCACCAAAGCAATGTATGAGTAGCATTTAAAGCATTGCCGCAAGCAGTGCTACGTTGTTGGTCAACTGTCACGGCGGTAACACCAACCTGTTTTACAGACAATACGATTATTAAAAGAGTTCACAAAACTAACGATTCTGTagcaaaacattttaacatgttGCAACAAGTGTGGGCTACAGCAACAGCCAAAATGTTATGTAGCTAGCACTGTTGCTGTGCTAATTCCAGTTGACTGTAAACAGGATAGGGTTATAGCTATGACAGACAATGCGAATAGTCCTCTATCACAACCCATTGAGAACTAACTGAGCATTTTTACGGTACTTTGGcggttaaactgttaaaatatatgataaaagAAGCTCAGGTTTGTAGAGCATTGGCCGTGCAACACTGGCATCTGCGTTAGCATACTTGCTAATTTGAGTATGTTTCTGGCCTAGGGCTTCTGAACTAACCAACCCTGTTAAAAAGAACATCAACGAAGCCAAGCCACTTCAACTTCCTCTTTCTTATAGTTTCAAATTTaccaaaaaatatgaaaaaattaaaagggaagaaaaggaaaaagtaaATTTTCTCCACTTTGTGTACCTCCCAAAGCGTTGTATTGCATGTGTTAAAGAAAAGCGAAGGATTTTATCTCGTCATTTCGGCGCCATCTGAGCAACAAGTGATTGACCTCTTTCCTAGCGTGCGAGtacagatatagagagagacgagggcaggaggaaaaaaaaaaaaaaaaaacagtaatacattATCTTCTGCAGAGGCGAGAACAGGCAGACACGGAACGACATATCACTGTTTACCAATCAGCTTCTCAAGTGACAGCAATCCACAGCTCTGTGGAGACGCATCCATTTGCACTCACTCATGCACTTgtaaacattctttttttaatttttttttcttcttatttggTTTGATTTCCGGTTCTTCTCGTCATAACGCTGAATTTCTTGCTCCGGACTCTGCCCAAACGCCCTCCCCCCTGCCCCCCTTTCTGAGAACACACTCCCTCAAACTCTTTGTGCAAAATGAATGCTTTTCACACCCTCTTTTCCTTTTGTATTGTATATGTAAAATTTCATATATGTATAGTGGATAAAGATGTGGccaactggagaaaaaaaaaagtccttaaaacatatatttttaaataaaatgttacaattta

Function

GO: NA

KEGG:

id description
K16665 LRRTM1_2; leucine-rich repeat transmembrane neuronal protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95162 lncRNA upstream 11617 1998119 ~ 2077303 (+) True G70532
TU95159 lncRNA upstream 47787 1998119 ~ 2041133 (+) False G70532
TU95161 lncRNA upstream 56845 1998119 ~ 2032075 (+) False G70532
TU95163 lncRNA upstream 74016 2011528 ~ 2014904 (+) True G70533
TU95152 lncRNA upstream 790887 1297772 ~ 1298033 (+) True G70527
TU95209 lncRNA downstream 125781 2223800 ~ 2224153 (+) True G70575
TU95211 lncRNA downstream 132456 2230475 ~ 2230945 (+) True G70577
TU95214 lncRNA downstream 139698 2237717 ~ 2238097 (+) True G70580
TU95217 lncRNA downstream 172861 2270880 ~ 2271131 (+) True G70583
TU95223 lncRNA downstream 176409 2274428 ~ 2274856 (+) True G70587
XM_007239718.3 mRNA upstream 1116077 957420 ~ 972843 (+) True LOC103041625
XM_022671941.1 mRNA upstream 1176398 899894 ~ 912522 (+) True LOC103041930
XM_007239720.3 mRNA upstream 1211516 867909 ~ 877404 (+) True LOC103042240
XM_022671940.1 mRNA upstream 1234865 845025 ~ 854055 (+) False LOC111193067
XM_007239721.3 mRNA upstream 1251191 805950 ~ 837729 (+) False LOC103042548
XM_022671900.1 mRNA downstream 592719 2690738 ~ 2701134 (+) True gpx3
XM_022671953.1 mRNA downstream 730390 2828409 ~ 2854104 (+) True LOC103025734
XM_022671954.1 mRNA downstream 730390 2828409 ~ 2854104 (+) False LOC103025734
XM_007257738.3 mRNA downstream 759876 2857895 ~ 2866216 (+) True LOC103021672
XM_022671955.1 mRNA downstream 773557 2871576 ~ 2946729 (+) False LOC103025421
TU95147 other upstream 819516 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 1083082 1005483 ~ 1005838 (+) True G70385
TU94937 other upstream 1233762 845052 ~ 855158 (+) True LOC111193067
TU94935 other upstream 1248706 794712 ~ 840214 (+) False LOC103042548
TU94933 other upstream 1248706 805956 ~ 840214 (+) True LOC103042548
TU95246 other downstream 260864 2358883 ~ 2359229 (+) True G70604
TU95561 other downstream 1279665 3377684 ~ 3378610 (+) True G70846
TU95569 other downstream 1314432 3412451 ~ 3574758 (+) False LOC111193071
LOC111193076 other downstream 2858260 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 2858279 4956298 ~ 4980011 (+) True G71247

Expression Profile