RNA id: TU95212


Basic Information

Item Value
RNA id TU95212
length 454
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G70578
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2230491 ~ 2230944 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggaactctttgaaaagatgtgtcttcagtcgacgtttgaagaccgtgagtgactctgctgttctgacatccagtggaagttcattccaccaccttggtgccagcacagagaagagtctggatgtctgttttctgtgtgttttgagtgatggaggttcgagccgagccgtactggaagctctaagagctcttggtgcagatctggctttgaccatcgccatcaggtatgaaggtgctggtccgttttttgccttgtaggccagcgtcagggttttgaatcggatgcgggcggcaacaggaagccagtggagggaacgcagcaaaggagtcacatgactgaacttcggaagattgaagacgagtcgtgctgccgcgttctgaattaactgtagtggtttggtggctcacagtggaagaccagccagtagagagttgcagtagtcaagtcttgagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95208 lncRNA downstream 44516 2184594 ~ 2185975 (-) True G70574
TU95206 lncRNA downstream 132523 2054736 ~ 2097968 (-) True G70572
TU95153 lncRNA downstream 932462 1297709 ~ 1298029 (-) True G70528
TU95151 lncRNA downstream 941371 1288873 ~ 1289120 (-) True G70526
TU95146 lncRNA downstream 962049 1267968 ~ 1268442 (-) True G70521
TU95213 lncRNA upstream 6355 2237299 ~ 2237515 (-) True G70579
TU95238 lncRNA upstream 80341 2311285 ~ 2346852 (-) True G70597
TU95239 lncRNA upstream 82852 2313796 ~ 2322706 (-) True G70598
TU95244 lncRNA upstream 100352 2331296 ~ 2346826 (-) True G70602
TU95247 lncRNA upstream 127867 2358811 ~ 2359229 (-) True G70605
XM_022671943.1 mRNA downstream 10127 1998156 ~ 2220364 (-) True LOC103026956
XM_022671899.1 mRNA downstream 1195475 1009886 ~ 1035016 (-) True LOC103042850
XM_022671898.1 mRNA downstream 1224614 988446 ~ 1005877 (-) True LOC103041113
XM_015603201.2 mRNA downstream 1247888 975095 ~ 982603 (-) True rps5
XM_015603200.2 mRNA downstream 1247910 975095 ~ 982581 (-) False rps5
XM_022671944.1 mRNA upstream 204736 2435680 ~ 2488996 (-) True LOC103026657
XM_022671945.1 mRNA upstream 270044 2500988 ~ 2535981 (-) True LOC103022920
XM_007257740.3 mRNA upstream 430567 2661511 ~ 2678905 (-) False dctn4
XM_007257739.3 mRNA upstream 430567 2661511 ~ 2678905 (-) True dctn4
XM_022671946.1 mRNA upstream 473251 2704195 ~ 2742373 (-) True tnip1
TU95334 other upstream 504924 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 1116856 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 1538217 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 2181004 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 2651226 4882170 ~ 4884488 (-) True G71235

Expression Profile